PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G10130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 537aa MW: 56170.8 Da PI: 6.7092 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.6 | 1.2e-27 | 213 | 267 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQkYR++ OGLUM01G10130.1 213 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQKYRSH 267 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.104 | 210 | 269 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.09E-18 | 211 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 211 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-26 | 213 | 267 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-7 | 216 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP PSPADVADEV DAFIVDDSCL LEYIDFSCCD 60 VPFFHADDGD ILPDLEVDPT ELLAEFASSP DDKPPPTTSA PGPGEPAAAA GAKEDVKEDG 120 AAAAAAAADY DGSPPPPRGK KKKDDEERSS SLPEEKDAKN GGGDEVLSAV TTEDSSAGAA 180 KSCSPSAEGH SKRKPSSSSS SAAAGKNSHG KRKVKVDWTP ELHRRFVQAV EQLGIDKAVP 240 SRILELMGIE CLTRHNIASH LQKYRSHRKH LMAREAEAAS WTQKRQMYTA AAAAATVAAG 300 GGPRKDAAAA TAAVAPWVMP TIGFPPPHAA AMVPPPPHPP PFCRPPLHVW GHPTAGVEPT 360 TAAAPPPPSP HAQPPLLPVW PRHLAPPPPP LPAAWAHGHQ PAPVDPAAYW QQQYNAARKW 420 GPQAVTPGTP CMPPPLPPAA MLQRFPVPPV PGMVPHPMYR PIPPPSPPQG NKLAALQLQL 480 DAHPSKESID AAIGDVLVKP WLPLPLGLKP PSLDSVMSEL HKQGIPKVPP AASGAAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-15 | 218 | 269 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 143 | RGKKKKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121019 | 0.0 | AK121019.1 Oryza sativa Japonica Group cDNA clone:J023049D13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615905.1 | 0.0 | probable transcription factor GLK2 isoform X1 | ||||
Swissprot | Q5NAN5 | 0.0 | GLK2_ORYSJ; Probable transcription factor GLK2 | ||||
TrEMBL | A0A0D9Y5V8 | 0.0 | A0A0D9Y5V8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G10130.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 2e-44 | GBF's pro-rich region-interacting factor 1 |
Publications ? help Back to Top | |||
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