PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G00830.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 291aa    MW: 30274 Da    PI: 7.834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G00830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09208251755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ + RR+ri +++  L++l+P+      +K++ +++LekA++Y+k Lq
  OGLUM01G00830.1 208 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 251
                      67799*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-14199261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-12201255No hitNo description
PROSITE profilePS5088814.983201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-12202259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6208251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MMAAQASSKR GMLLPREAVL YDDEPSMPLE ILGYHGNGVG GGGCVDADYY YSWSGSSSSS  60
SSSVLSFDQA AVGGGGGGCA RQLAFHPGGD DDDCAMWMDA AAGAMVENTS VVAGGGNNYC  120
HRLQFHGGAA GFGLASPGSS VVDNGLEIHE SNVSKPPPPA AKKRACPSGE ARAAGKKQCR  180
KGSKPNKAAS ASSPSPSPSP NKEQPQSAAA KVRRERISER LKVLQDLVPN GTKVDLVTML  240
EKAINYVKFL QLQVKVLATD EFWPAQGGKA PELSQVKDAL DAILSSQHPN K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085870.0AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643698.11e-179transcription factor bHLH83
TrEMBLA0A0D9Y2A90.0A0A0D9Y2A9_9ORYZ; Uncharacterized protein
STRINGOGLUM01G00830.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.14e-46ROOT HAIR DEFECTIVE6