PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G00330.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 337aa    MW: 37469.7 Da    PI: 6.5732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G00330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.6e-50231541128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeel+ +yL k++++ ++++  vi+evdiyk++Pw+Lp +  + +++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++
  OGLUM01G00330.1  23 LPPGFRFHPTDEELLLHYLGKRAAAAPCPA-PVIAEVDIYKYNPWELPaMaVFGESDGEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKPI 115
                      79***************************9.89***************5334455666************************************ PP

              NAM  93 lskkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                        +++++    g+kk Lvfy+gr pkg+kt+W+mheyrl
  OGLUM01G00330.1 116 SISETQQtvlLGVKKALVFYRGRPPKGTKTSWIMHEYRL 154
                      99844444559**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6017194IPR003441NAC domain
PROSITE profilePS5100559.33323194IPR003441NAC domain
PfamPF023659.7E-2624154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTIDLQLPAA ACGDHHTAAG AGLPPGFRFH PTDEELLLHY LGKRAAAAPC PAPVIAEVDI  60
YKYNPWELPA MAVFGESDGE WYFFSPRDRK YPNGVRPNRA AGSGYWKATG TDKPISISET  120
QQTVLLGVKK ALVFYRGRPP KGTKTSWIMH EYRLANAASS YTSNMKQLAS SSSSSSSSAS  180
MRLDEWVLCR IYKKKEANQQ LQHYINMMMD DDNDDEHNLQ VQQQQQQAQS HRMPRPPSIS  240
DYLLDYSDDL PPSTDQTPSL HLGFTAVNEG SSNNNKRHKT MEEYYSISIS TAEMLHASSS  300
TSNNKSTQIN FSSIFEPQTP AAAGHQLMSS HNDDTSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-672320017171NO APICAL MERISTEM PROTEIN
1ut4_B3e-672320017171NO APICAL MERISTEM PROTEIN
1ut7_A3e-672320017171NO APICAL MERISTEM PROTEIN
1ut7_B3e-672320017171NO APICAL MERISTEM PROTEIN
3ulx_A3e-672319515169Stress-induced transcription factor NAC1
4dul_A3e-672320017171NAC domain-containing protein 19
4dul_B3e-672320017171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028180.0AP002818.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0436E04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621004.10.0NAC transcription factor 29
SwissprotA0SPJ31e-78NAMA1_TRITD; NAC transcription factor NAM-A1
SwissprotK4BWV21e-78NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A0D9Y2410.0A0A0D9Y241_9ORYZ; Uncharacterized protein
STRINGOGLUM01G00330.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.17e-72NAC domain containing protein 47
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]