PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA12G0187900.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 330aa MW: 36939.2 Da PI: 6.7805

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA12G0187900.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.6	1.6e-55	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdee++++yL++kv +++ + +i evd++k+ePwdLp k+ ++ekewyf++++d+ky+tg r+nrat++gyWkatgkdke ORGLA12G0187900.1 14 LPPGFRFHPTDEEIITFYLAPKVVDSRGFCVAAIGEVDLNKCEPWDLPgKAKMNGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKE 105 79******************99999556588***********544445788******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++ l+g+kktLvfykgrapkg kt+Wvmheyrl ORGLA12G0187900.1 106 IFRNHHMLIGMKKTLVFYKGRAPKGDKTNWVMHEYRL 142 *********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-62	10	173	IPR003441	NAC domain
PROSITE profile	PS51005	59.405	14	173	IPR003441	NAC domain
Pfam	PF02365	3.1E-28	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGEQQQQVER QPDLPPGFRF HPTDEEIITF YLAPKVVDSR GFCVAAIGEV DLNKCEPWDL 60 PGKAKMNGEK EWYFYCQKDR KYPTGMRTNR ATEAGYWKAT GKDKEIFRNH HMLIGMKKTL 120 VFYKGRAPKG DKTNWVMHEY RLADASPPQP PPPPSSAEPP RQDDWAVCRI FHKSSGIKKP 180 VPVPMQMPMQ MQMPVAHQVP AANYQQQMAM ASASIIQAPM QMQMPSMSDQ LQMLDDFSTG 240 SLMAPPPPPP SYSTLPGFPL QINGGAQQFV GNPSMYYQQQ QQQQMDMAAG GFVVSEPSSL 300 VVSPQDAADQ NNAADISSVA CNMDATIWKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-52	1	179	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-52	1	179	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-52	1	179	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-52	1	179	4	171	NO APICAL MERISTEM PROTEIN
4dul_A	8e-52	1	179	4	171	NAC domain-containing protein 19
4dul_B	8e-52	1	179	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA12G0187900.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU846995	0.0	EU846995.1 Oryza sativa Japonica Group clone KCS259A08 NAC protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629856.1	0.0	NAC domain-containing protein 79
Swissprot	Q9FK44	2e-78	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	I1R8M3	0.0	I1R8M3_ORYGL; Uncharacterized protein
STRING	ORGLA12G0187900.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	3e-78	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]