PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA12G0169600.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 378aa MW: 41684.3 Da PI: 8.105

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA12G0169600.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.8	5.4e-46	37	194	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......................kvkaeekew.yfFskrdkkya 69 pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk +++a eke+ yfF+ r +ky+ ORGLA12G0169600.1 37 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-DIIKEIDIYKHDPWDLPKvshgavalqgssssssssssslsTAAAAEKECgYFFCLRGRKYR 127 69*************************.99***********7799****9999998888764444677878******* PP NAM 70 tgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ r+nr+t sg+Wkatg dk+++s+ g +glkk+Lv+y+g+a kg+ktdW+mhe+rl ORGLA12G0169600.1 128 NSIRPNRVTGSGFWKATGIDKPIYSSslaaaaagAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 194 *********************8777666655555*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-47	36	219	IPR003441	NAC domain
PROSITE profile	PS51005	47.612	36	219	IPR003441	NAC domain
Pfam	PF02365	8.7E-23	38	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEEEKRLERI IKEIDSSPIS PGGSGAALLA EDDDLVFPGF RFHPTDQELV GFYLTRKVEK 60 KPFSIDIIKE IDIYKHDPWD LPKVSHGAVA LQGSSSSSSS SSSSLSTAAA AEKECGYFFC 120 LRGRKYRNSI RPNRVTGSGF WKATGIDKPI YSSSLAAAAA GAGDCIGLKK SLVYYRGSAG 180 KGTKTDWMMH EFRLPSSISD SDHLQDASET WTICRIFKRS MTYTKGRAAA AASMNKRISH 240 QLQHIHHHQQ QFYYHEVVHD HGHHHRRHLQ QYAGRASMAA AAANIVDVID HSSDAETTTR 300 SHSHSQSHLV ADIRHRQSPF MLDFHAGTAV SSSSTAAAGW SEVMSFSRDG GSSSGSSWDE 360 LGRIMDISTN SANNNYYL

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEEEKRLERI IKEIDSSPIS PGGSGAALLA EDDDLVFPGF RFHPTDQELV GFYLTRKVEK  60
KPFSIDIIKE IDIYKHDPWD LPKVSHGAVA LQGSSSSSSS SSSSLSTAAA AEKECGYFFC  120
LRGRKYRNSI RPNRVTGSGF WKATGIDKPI YSSSLAAAAA GAGDCIGLKK SLVYYRGSAG  180
KGTKTDWMMH EFRLPSSISD SDHLQDASET WTICRIFKRS MTYTKGRAAA AASMNKRISH  240
QLQHIHHHQQ QFYYHEVVHD HGHHHRRHLQ QYAGRASMAA AAANIVDVID HSSDAETTTR  300
SHSHSQSHLV ADIRHRQSPF MLDFHAGTAV SSSSTAAAGW SEVMSFSRDG GSSSGSSWDE  360
LGRIMDISTN SANNNYYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-43	38	219	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-43	38	219	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-43	38	219	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-43	38	219	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	7e-43	38	219	22	168	NAC domain-containing protein 19
3swm_B	7e-43	38	219	22	168	NAC domain-containing protein 19
3swm_C	7e-43	38	219	22	168	NAC domain-containing protein 19
3swm_D	7e-43	38	219	22	168	NAC domain-containing protein 19
3swp_A	7e-43	38	219	22	168	NAC domain-containing protein 19
3swp_B	7e-43	38	219	22	168	NAC domain-containing protein 19
3swp_C	7e-43	38	219	22	168	NAC domain-containing protein 19
3swp_D	7e-43	38	219	22	168	NAC domain-containing protein 19
4dul_A	6e-43	38	219	19	165	NAC domain-containing protein 19
4dul_B	6e-43	38	219	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA12G0169600.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619497.1	0.0	NAC domain-containing protein 41 isoform X2
Swissprot	Q9SK55	2e-74	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	I1R840	0.0	I1R840_ORYGL; Uncharacterized protein
STRING	ORGLA12G0169600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-74	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]