PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0155200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 776aa    MW: 83833.1 Da    PI: 7.5332
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0155200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.39.6e-16471510241
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk +
  ORGLA12G0155200.1 471 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 510
                        689**********************************976 PP
2TCR512.8e-16555593139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  ORGLA12G0155200.1 555 RHKRGCNCKKSSCLKKYCECYQGGVGCSMSCRCEGCKNA 593
                        589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.1E-15470511IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.937471595IPR005172CRC domain
PfamPF036388.3E-12473508IPR005172CRC domain
SMARTSM011141.4E-16555596IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11557593IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MDTPDRPPRA AAAAAAAMKN LAIYSLIRFL CLQDSPVFNF INSLSPIPPP KPSDSAHNVQ  60
LFKSSDLAPV SSIFASPHVN PAKESKLPIR EDSVQLSRES HSPNSVRTRT GATSSIIRMI  120
RCKNIVSENC SITCYLNDST SSKASQPIQL CGGCAESDTN QNTDGKKDPT TEQDRTDIEF  180
VLLDQCGPEK MDSSQSGNNA CENQLSEQHK DELGSFDGGY MFAHQPHSDM LRLAPPFESE  240
TQLVNETLQT DNVYCETLLT DGPSGSYTQN SAPDPHLYWA GAVEGCATDY TPQMLPGACQ  300
SQLVPNDQIN NKLNEPSDYM PMDHNVSSQN LRGMRRRCLF NEKSGAANKG AKNSSARHST  360
NSTTPRRKIS SSDNNLKTLR TPPCALPGIG LHLNALATVP KDKMVPHNDI QSSLNQASNV  420
PSAVGSSPPT DDPHTIYDDS SQTAVVAYVG ESSQGSPKKK RHKFDNGDGT SCKRCSCKKS  480
KCLKLYCECF HAGVFCSEPC SCQGCLNKPS NMETVLSTRE QIESRNPLAF APKVIRTEPG  540
QELADDSNKT PASARHKRGC NCKKSSCLKK YCECYQGGVG CSMSCRCEGC KNAFGRREGV  600
ALLGIEEAKH GCEEKDGGVK EETTDNDKQL VIYQDSINLT PAESVLATPS VVDYRPLVAL  660
PPLSSKKPRS STKLGGYSSR LEGHLKSDIL LSPFESYAEM MLGDGTSNVL KGESSPQTSV  720
KVVSPNKKRV SPPRIGTGLS PICKSGRKLI LKSIPSFPSL GGDITNEDPN TSSLAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1647559214120Protein lin-54 homolog
5fd3_B3e-1647559214120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00370DAPTransfer from AT3G22780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0155200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739420.0AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620275.10.0protein tesmin/TSO1-like CXC 2
TrEMBLI1R7P60.0I1R7P6_ORYGL; Uncharacterized protein
STRINGORGLA12G0155200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-76Tesmin/TSO1-like CXC domain-containing protein