PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0150300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 354aa    MW: 40498.9 Da    PI: 8.6755
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0150300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.5e-15381141494
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        + +++p k ae ++g+ ++     l+++sg++W+v +   k  ++ +l++GW++F+ka++L+e+D + F+ +g+ ++++ +
  ORGLA12G0150300.1  38 HGISIPEKVAEIFSGQITK--GFNLKSPSGETWRVGV--AKVADELILKSGWEDFAKAHELQENDLLFFTCNGHGNGSCSF 114
                        459*******777777555..59999***********..*******************************77665554443 PP
2B348.41.7e-15247344198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                        f+ vl +++v ++++l++p +fa++h +   +s ++ l    + ++W+vk+ y +++ +++     W +F ++n+L+eg +++F+l++  ++
  ORGLA12G0150300.1 247 FVVVLQTAHVRRRNILIVPTRFAADHLER--KSHDILLIRpNRKQKWSVKYYYlSNTTRGFNCH-RWIKFIRENRLREGNVCIFELMKGaRR 335
                        788999********************544..45567776636779******8865555555544.8*******************9977688 PP

                        E..EEEEE- CS
                 B3  90 felvvkvfr 98 
                         +++v+v+ 
  ORGLA12G0150300.1 336 PTMTVHVIG 344
                        889999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-1821124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.06925122IPR003340B3 DNA binding domain
CDDcd100173.77E-1427120No hitNo description
Gene3DG3DSA:2.40.330.107.8E-1828124IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-628122IPR003340B3 DNA binding domain
PfamPF023621.7E-1237112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-18240344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-21241342IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-18245341No hitNo description
PROSITE profilePS5086313.225247346IPR003340B3 DNA binding domain
PfamPF023622.8E-13247344IPR003340B3 DNA binding domain
SMARTSM010197.9E-10247346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGEKGCESCR KWQEHYYREH MDVSRIRFFR LMTGDFAHGI SIPEKVAEIF SGQITKGFNL  60
KSPSGETWRV GVAKVADELI LKSGWEDFAK AHELQENDLL FFTCNGHGNG SCSFDVLIFD  120
ASGCEKVSCF FTGKKNSYMC KNFNSIGGQV AGQYLSSDSE DTSTPSVLIG SPHKASTSKK  180
LSGKTKTNPR KEPEDPNCSH WHVIEEKNTD DDEHADYHYT RFANYLTGEE RDEIFSLVSL  240
QPGNPVFVVV LQTAHVRRRN ILIVPTRFAA DHLERKSHDI LLIRPNRKQK WSVKYYYLSN  300
TTRGFNCHRW IKFIRENRLR EGNVCIFELM KGARRPTMTV HVIGKADNRF VLLG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0150300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548290.0AL954829.6 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619308.10.0LOW QUALITY PROTEIN: B3 domain-containing protein LOC_Os12g40090-like
SwissprotQ2QMT50.0Y1209_ORYSJ; B3 domain-containing protein LOC_Os12g40090
TrEMBLA0A0D3HWA30.0A0A0D3HWA3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GVZ80.0A0A0E0GVZ8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RJF40.0A0A0E0RJF4_ORYRU; Uncharacterized protein
TrEMBLA2ZM930.0A2ZM93_ORYSI; Uncharacterized protein
TrEMBLI1R7J70.0I1R7J7_ORYGL; Uncharacterized protein
STRINGORUFI12G19410.10.0(Oryza rufipogon)
STRINGONIVA03G41670.10.0(Oryza nivara)
STRINGORGLA12G0150300.10.0(Oryza glaberrima)
STRINGOBART12G17530.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-29B3 family protein