PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0140200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 298aa    MW: 33797.3 Da    PI: 5.1983
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0140200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-1755102148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+WT +Ed+ lv++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  ORGLA12G0140200.1  55 RGPWTVDEDLTLVNYIADHGEGRWNSLARAAGLKRTGKSCRLRWLNYL 102
                        89********************************************97 PP
2Myb_DNA-binding55.61.2e-17108151146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  ORGLA12G0140200.1 108 RGNFTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 151
                        89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.44850102IPR017930Myb domain
SuperFamilySSF466892.51E-3053149IPR009057Homeodomain-like
SMARTSM007171.3E-1454104IPR001005SANT/Myb domain
PfamPF002498.7E-1655102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2256109IPR009057Homeodomain-like
CDDcd001676.86E-1157102No hitNo description
PROSITE profilePS5129423.86103157IPR017930Myb domain
SMARTSM007171.2E-15107155IPR001005SANT/Myb domain
PfamPF002494.3E-16108151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-24110156IPR009057Homeodomain-like
CDDcd001671.18E-11110151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAASQRSRST AAQLDVDDQA AADQLMTMMR RPAAALQDEA AAEEEAADLQ LELRRGPWTV  60
DEDLTLVNYI ADHGEGRWNS LARAAGLKRT GKSCRLRWLN YLRPDVKRGN FTADEQLLIL  120
DLHSRWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL NCDANSARFK DAMRYLWMPR  180
LADASQLGDH HGYNGTTAMG DAHGMPVMTS SSSDSFATSE SYDGGLYANV QDNEMVNGGD  240
YYWMQGANQG FCSNYESEQQ LHPHEHSQFQ DPDLVGWVQG FSEGISENFW SLEDIWKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-264915521126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0140200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4061840.0CU406184.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108M20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618854.10.0transcription factor JAMYB-like
SwissprotQ2QZJ81e-109JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLI1R7960.0I1R796_ORYGL; Uncharacterized protein
STRINGORGLA12G0140200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.17e-75myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]