PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0092700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 404aa    MW: 43849.6 Da    PI: 6.5149
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0092700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.51.5e-2091332128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          GfrF+P++ee++++yL + ++g++ + +e  i+++d+y + eP+dL  k    +++ + + +fF+  ++ +    + +r++  g+W ++ 
  ORGLA12G0092700.1   9 KLGFRFNPSQEEVITYYLPRLIAGHPPKDTEGyIHRADVYGAdEPRDLAgKyapVARSPNGDRFFFTGCKRVKG---KFSRSAGGGTWVSQS 97 
                        67************************6655555*******9869****843443333334478***99998764...7999999*****886 PP

                NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + k++++++g ++g  k + f     + g++tdW+m+ey+l
  ORGLA12G0092700.1  98 S-KDLKNREGIKIGEVKNFRFK----KGGNNTDWLMEEYHL 133
                        6.888888*************8....567789*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-238152IPR003441NAC domain
PROSITE profilePS5100524.628152IPR003441NAC domain
PfamPF023651.4E-1411133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MASLDLLLKL GFRFNPSQEE VITYYLPRLI AGHPPKDTEG YIHRADVYGA DEPRDLAGKY  60
APVARSPNGD RFFFTGCKRV KGKFSRSAGG GTWVSQSSKD LKNREGIKIG EVKNFRFKKG  120
GNNTDWLMEE YHLCGKEAGG VVEPVVCRIY VSPRAAPDSV AHQESAALPP PQELVPPPQE  180
LAPPPYSAAQ AAPQAPAPPR QVPVITQQQA PPQKRPAAPV AEPPCATKKM KGAVSAKPMA  240
PQSSVTASAA PPRCAVAPSQ HHPPFQTYPT DPFEPPAPAA SVTQPSVPAT PEQGPAYVPD  300
PADIGMEMDE LMSFLDSTPV DGILPSQLFE YDELAKELED ALQGGGEEDG NDNPPRRRGR  360
GGCDKQSQGG YRVLLKDMGD DQIDQQWLKV YLKDYHHLMK SCKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0092700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619212.10.0vegetative cell wall protein gp1
TrEMBLI1R5X10.0I1R5X1_ORYGL; Uncharacterized protein
STRINGORGLA12G0092700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.11e-13NAC domain containing protein 77