PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0080500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1369aa    MW: 152381 Da    PI: 7.5807
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0080500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003512501273122
                         EEET..TTTEEESSHHHHHHHHHH CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                         ++C    C++sFs++ +L  H r 
  ORGLA12G0080500.1 1250 FPCDieGCDMSFSTQQDLLLHKRD 1273
                         789999***************985 PP
2zf-C2H211.90.0007113331359123
                         EEET..TTTEEESSHHHHHHHHHH..T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                         y+C+   Cg++F+  s++ rH r+  H
  ORGLA12G0080500.1 1333 YECQepGCGQTFRFVSDFSRHKRKtgH 1359
                         899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-161960IPR003349JmjN domain
PROSITE profilePS5118314.2012061IPR003349JmjN domain
PfamPF023753.4E-142154IPR003349JmjN domain
PROSITE profilePS5118432.998186355IPR003347JmjC domain
SMARTSM005585.2E-43186355IPR003347JmjC domain
SuperFamilySSF511979.89E-23203352No hitNo description
PfamPF023731.6E-34219338IPR003347JmjC domain
SMARTSM003559.712501272IPR015880Zinc finger, C2H2-like
SMARTSM003551512731297IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90712731302IPR007087Zinc finger, C2H2
PROSITE patternPS00028012751297IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-1412841338No hitNo description
Gene3DG3DSA:3.30.160.605.3E-1113001327IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.65513031332IPR007087Zinc finger, C2H2
SMARTSM003558.6E-413031327IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013051327IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-1013281356IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.92613331364IPR007087Zinc finger, C2H2
SMARTSM003550.1813331359IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013351359IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1369 aa     Download sequence    Send to blast
MSLQPPAVEP PEWLRTLPVA PEYHPTLAEF ADPIAYILRI EPEASRYGIC KIVPPLPRPP  60
EDDTFRRLQD AFAAAASSNG AGGDPSPTFP TRLQQVGLSA RNRRAASRRV WESGERYTLE  120
AFRAKAAEFE PPRHAAPPRN PTHLQLEALF WAACASRPFS VEYGNDMPGS AFASPDELPD  180
AANATDVGET EWNMRVAPRA RGSLLRAMAR DVAGVTTPML YVAMLYSWFA WHVEDHELHS  240
LNFLHFGKAK TWYGVPRDAM LAFEETVRVH GYADDLNAIM AFQTLNEKTT VLSPEVLLSA  300
GVPCCRLVQK AGEFVITFPG AYHSGFSHGF NCGEASNIAT PHWLQVAKEA AIRRASTNCG  360
PMVSHYQLLY ELALSLRPRE PKNFYSVPRS SRLRDKNKNE GDIMVKENFV GSVTENNNLL  420
SVLLDKNYCI IVPNTDFFVP SFPVALESEA TVKQRFTAGP CSISQQGAEN MAVDHVAVDK  480
VTDIQDMSGS LYPCETSLVG CSNRKLYETK YGQRDAAALC LSTSEIQSRG IDKARSHPAG  540
GILDQGRLPC VQCGILSFAC VAIIQPREAA VQFIMSKECI SSSAKQGGIG ASDDTSNWID  600
QSHEISPPPG PASGTDDNVK HTVSLAHVSD RCRELYASNT DGCTSALGLL ASAYDSSDSD  660
DETTEDVLKH SKKNDSVNQS MDTQILETSA SCSSTVRCQK TNSHSHEEEC EARATSLMKP  720
VSHNSRPISQ SNRDTDIDQF IELGKSGTQC SGYLDLVDDL TTSVLKSSSD TCVSAAKASM  780
DPDVLTMLRY NKDSCRMHVF CLEHALETWT QLQQIGGANI MLLCHPEYPR AESAAKVIAE  840
ELGIKHDWKD ITFKEATEED VKKIRLALQD EDAEPTGSDW AVKMGINIYY SAKQSKSPLY  900
SKQIPYNSII YKAFGQENPD SLTDYGCQKS GSTKKKVAGW WCGKVWMSNQ VHPLLARERE  960
EQNSSVVYGK AMFTTISHGK VQDEASTRCN TSNRTPSKRT SRRKKGVSAE KSKPKNKRST  1020
ASDEVSMHCS GLGMNSGVIH DQTENSDDYD KHGNGDEIEE GTNPQKYQQR KLQNVTRKSS  1080
SKKRKDEKRT DSFHELYDED NGVDYWLNMG SGHDATLGNS QQQSPDPVKV KSGGKLQGKR  1140
KSSKYKSNDD LLNEENKLQK MNKKSSSKKQ KNDKINRQLQ EDQTEDDHMD HLVDVAVADE  1200
VTLDNEDKIT EDKIDDVKVK SRGKSQNGKR KGSKHQASDG LRTGNKVAKF PCDIEGCDMS  1260
FSTQQDLLLH KRDICPVKGC KKKFFCHKYL LQHRKVHIDE RPLKCTWKGC KKAFKWPWAR  1320
TEHMRVHTGV RPYECQEPGC GQTFRFVSDF SRHKRKTGHS SDKRRKNST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A7e-70123767353Transcription factor jumonji (Jmj) family protein
6ip4_A7e-70123767353Arabidopsis JMJ13
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0080500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652510.0AK065251.1 Oryza sativa Japonica Group cDNA clone:J013002J08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620626.10.0lysine-specific demethylase REF6
TrEMBLI1R5J90.0I1R5J9_ORYGL; Uncharacterized protein
STRINGORGLA12G0080500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-159relative of early flowering 6