PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0063500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 391aa    MW: 41447.4 Da    PI: 7.3902
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0063500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.91.6e-21294356163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s++
  ORGLA12G0063500.1 294 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENASLRDEVNRIRKEYDELLSKN 356
                        89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.3E-29198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.6E-39143268No hitNo description
Gene3DG3DSA:1.20.5.1704.0E-17288353No hitNo description
SMARTSM003383.0E-21294358IPR004827Basic-leucine zipper domain
PfamPF001701.5E-20294356IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.415296359IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.0E-11297353No hitNo description
CDDcd147024.84E-24299350No hitNo description
PROSITE patternPS000360301316IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGSSGADAPT KTSKASAPQE QQPPASSSTA TPAVYPDWAN FQGYPPIPPH GFFPSPVASS  60
PQGHPYMWGA QPMIPPYGTP PPPYVMYPPG VYAHPSMPPG AHPFTPYAMA SPNGNADPTG  120
TTTTAAAAAA GGETDGKSSE GKEKSPIKRS KGSLGSLNMI TGKNSTEHGK TSGASANGAI  180
SQSGESGSES SSEGSEANSQ NDSHHKESGQ EQDGEVRSSQ NGVSRSPSQA KLNQTMAIMP  240
MTSSGPVPAP TTNLNIGMDY WANTASSTPA IHGKATPTAA PGSMVPGEQW VQDERELKRQ  300
RRKQSNRESA RRSRLRKQAE CEELAQRAEV LKQENASLRD EVNRIRKEYD ELLSKNSSLK  360
EKLEDKQHKT DEAGVDNKLQ HSGDDSQKKG N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310316RRSRLRK
2310317RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0063500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU042950.0U04295.1 Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619718.10.0bZIP transcription factor 68 isoform X2
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLI1R5290.0I1R529_ORYGL; Uncharacterized protein
STRINGORGLA12G0063500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.19e-93basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]