PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA12G0062200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 452aa MW: 48033.8 Da PI: 5.8981

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA12G0062200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.4	3.7e-25	366	416	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+++l+d++ yF+lpi++AAk+L++c+T+LK iCR++G+ RWP+Rk++s+ ORGLA12G0062200.1 366 TKQLQLSDIAPYFELPIAKAAKKLDICATALKGICRKHGVLRWPYRKVRSI 416 89**********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	356	438	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-21	369	416	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MAGDGGNGAA DGGGEHLELD FFPSPLLDNF DVLELLDLSV LGDVDDDGAP PAPAPVQMSV 60 DGAGGGRINK PGSSVDDLVE WSTAFGNNCS KIDGEYGGAS TSSSAAPAPA PPQEDYCSGC 120 QVLREVVHSN GLEITKLCIH GGVASGEFYH AILDVYRVSA SAPAPALAHH SIINFRGRGY 180 DWVKQYLTEY ALRRAGGGFA VVQDSLSAFH DALCTTMAPC SSHVGDDDAH RRASSSAAAA 240 AEERTIGNGD HGQLVVHNAA VLPMLESSRC LVAADQAATT NNNGSGDRRL VVLDTTAIQP 300 PASGCILHMA FPSKSYQSSR PTTLPSRYQE CTCNPVAYEM DGVRSSLAPI CWPELLGYNV 360 TNREKTKQLQ LSDIAPYFEL PIAKAAKKLD ICATALKGIC RKHGVLRWPY RKVRSIDRQI 420 ATLRRSGNGD ATRNEIETLI ASRRRIVAGL DQ

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MAGDGGNGAA DGGGEHLELD FFPSPLLDNF DVLELLDLSV LGDVDDDGAP PAPAPVQMSV  60
DGAGGGRINK PGSSVDDLVE WSTAFGNNCS KIDGEYGGAS TSSSAAPAPA PPQEDYCSGC  120
QVLREVVHSN GLEITKLCIH GGVASGEFYH AILDVYRVSA SAPAPALAHH SIINFRGRGY  180
DWVKQYLTEY ALRRAGGGFA VVQDSLSAFH DALCTTMAPC SSHVGDDDAH RRASSSAAAA  240
AEERTIGNGD HGQLVVHNAA VLPMLESSRC LVAADQAATT NNNGSGDRRL VVLDTTAIQP  300
PASGCILHMA FPSKSYQSSR PTTLPSRYQE CTCNPVAYEM DGVRSSLAPI CWPELLGYNV  360
TNREKTKQLQ LSDIAPYFEL PIAKAAKKLD ICATALKGIC RKHGVLRWPY RKVRSIDRQI  420
ATLRRSGNGD ATRNEIETLI ASRRRIVAGL DQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA12G0062200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL831806	0.0	AL831806.5 Oryza sativa chromosome 12, . BAC OSJNBb0106P21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AL954160	0.0	AL954160.5 Oryza sativa chromosome 12, . BAC OSJNBb0078J08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664445.1	1e-114	PREDICTED: uncharacterized protein LOC102713973
TrEMBL	I1R516	0.0	I1R516_ORYGL; Uncharacterized protein
STRING	ORGLA12G0062200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-13	RWP-RK domain-containing protein