PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0043800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 568aa    MW: 59915.6 Da    PI: 4.5565
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0043800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.45.5e-23301641127
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya....tgkrknr.atks 80 
                        lppG+ F+Pt ee +++yL++ ++gk++++ e+  ++ +d+y   P  L++        +   +w+f ++r++++      +kr++r +++ 
  ORGLA12G0043800.1  30 LPPGVYFNPTREEAMHHYLNRWIAGKTIPEMEAgfVAGADVYGDGPDALRRrhrpgYWCNYVYKWFFLCHRKRQSLrrttGNKRAERvVAAG 121
                        79*************************777664459999**********8534554222244599999999988764432356888866779 PP

                NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        g+Wk     k+vl  +g   g +++L fy  ++++++kt+W+m+ey+
  ORGLA12G0043800.1 122 GRWKVEQG-KKVLG-GGGGGGERDSLGFY--SSNSTKKTSWIMEEYT 164
                        9***6544.68888.88899*********..556667*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-2326188IPR003441NAC domain
PROSITE profilePS5100529.31930188IPR003441NAC domain
PfamPF023651.4E-1531164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDVDPPPPLP PPPPPPPPPA TPQQNTAVEL PPGVYFNPTR EEAMHHYLNR WIAGKTIPEM  60
EAGFVAGADV YGDGPDALRR RHRPGYWCNY VYKWFFLCHR KRQSLRRTTG NKRAERVVAA  120
GGRWKVEQGK KVLGGGGGGG ERDSLGFYSS NSTKKTSWIM EEYTSSAADG AAAAEDRMEP  180
VLCKIYLSPR APAGEKRALF GEDGVAVGPD GRKRNARVAV LATLFDDVAA LLGQPVAAAA  240
LPAPGDQLGH GHFDDVAARF GQVAVAALPA SGDLGHGYFD DDAAALLGQV AMAPAPAPGH  300
HQQGYVVAEA PLPESGYLGH YHHDGHLAQA AAAPEQDHYL GYHSHDAHVA DGEATPEQGY  360
HDDAHVAVAP APEQGDLGHD QGHLAAALTP EECGEIVGAY EFHPEMVQML SMGFAVPDEQ  420
LVPQLLDPTA GGYDMASSAI ASVGDVKAYA AAAPTPRIRP NAAEAMAATA TAETMPPPLD  480
AVAAELSAPP RGLPPELAFS ALPSVQQEPS CDGDDDSNFG ELVAEVMPPL IGENADVDAG  540
SDEPLPDLAG ITPELDFGHD FFSNQHRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0043800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7323760.0AL732376.2 Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1R4I20.0I1R4I2_ORYGL; Uncharacterized protein
STRINGORGLA12G0043800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.11e-12NAC domain containing protein 63