PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0020700.1
Common NameOgl12g0016G16_14
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 365aa    MW: 39587.4 Da    PI: 4.2993
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0020700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.22.9e-18171432126
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgk.....rknr.atksgyW 83 
                        p G+ F P+ e+l+ +yL++ ++g+++e+  ++++e+d+y ++P +L +   ++ ++ k+wyf + ++ k  +g      r nr +   g+W
  ORGLA12G0020700.1  17 PSGYFFVPKPEQLIRDYLNHWITGRPIEElRDIVREADVYGSDPATLTEahrAYGHDGKSWYFLTVAKWKGGRGGagtagRLNRcVEGGGTW 108
                        89************************87725569999**********8434344457789****999999884434445599**666699** PP

                NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                        +++ + + +        g ++ + +   rap  +ktdW+m+e 
  ORGLA12G0020700.1 109 HNSQRRRVIEG-----YGDRQAFEY---RAPGNKKTDWLMEEI 143
                        *9988666654.....899999998...599999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-2114165IPR003441NAC domain
PROSITE profilePS5100521.86516165IPR003441NAC domain
PfamPF023652.2E-1017142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAEEDDKKQK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPIEELRDIV READVYGSDP  60
ATLTEAHRAY GHDGKSWYFL TVAKWKGGRG GAGTAGRLNR CVEGGGTWHN SQRRRVIEGY  120
GDRQAFEYRA PGNKKTDWLM EEIASNLPAA ITDEGIMVIC KVYLSPRAKQ ATADEEERQE  180
TNVVPGPKRL REAEATGYDA PAPETPQPDV GCSYSGGGET SQATASMDYC CSTTTHTADD  240
TANAAAYYYG DVDAIKPDAY DGGDYGIGIN ADGELVLCGN GHGGIGTQGQ MPLAMQNTNG  300
EMTLFSPMNG YGVGFNEEVR QEPQVGGEVE MNDFFNDLFV DFDGAGDPNP NPNEGGDSHG  360
HILCE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0020700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664975.19e-75PREDICTED: NAC domain-containing protein 76-like, partial
TrEMBLG2XLH40.0G2XLH4_ORYGL; Hypothetical_protein
STRINGORGLA12G0020700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.15e-10NAC domain containing protein 64