PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0201600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 241aa    MW: 27395.2 Da    PI: 5.2839
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0201600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.41.4e-2347108259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                        +Dg++WrKYG K+++g++f+rsY+rCt++   gC+++k+++++ ++dp ++++tY++eH+++
  ORGLA11G0201600.1  47 EDGFQWRKYGEKKIQGTHFTRSYFRCTYRndrGCQATKQIQQKdNNDPPMFQVTYSNEHTCT 108
                        8***************************99999*******8751679*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-2439108IPR003657WRKY domain
SuperFamilySSF1182907.85E-2240108IPR003657WRKY domain
SMARTSM007747.2E-3446109IPR003657WRKY domain
PROSITE profilePS5081117.28247110IPR003657WRKY domain
PfamPF031061.9E-2547107IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
FPAADVAADN HVVGKPRRSS SAAKRRRING EEYKSSSWSQ FTPVPHEDGF QWRKYGEKKI  60
QGTHFTRSYF RCTYRNDRGC QATKQIQQKD NNDPPMFQVT YSNEHTCTTT RLINNINNPA  120
ALHNLTANPN GHHDSDDDDT IFTKMIKQEE QAAWLPPPPP ADLATISNNF DETPGLHVCQ  180
EVPPSSSNSS VISHYADEFD HHQMLETTVM EEALGLGVDL DDPYFYDPNL LLIYESLMNC  240
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-1447107968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12327KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0201600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616433.10.0probable WRKY transcription factor 70
TrEMBLA0A0D3HHH00.0A0A0D3HHH0_9ORYZ; Uncharacterized protein
STRINGOBART11G01070.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-21WRKY family protein