PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0198500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 437aa    MW: 45167.2 Da    PI: 6.5939
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0198500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18369402134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs+Cgt++Tp+WR gpdg+ tLCnaCG++ +  +
  ORGLA11G0198500.1 369 CSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDR 402
                        *****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.7E-17363413IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.231363401IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.23E-14365426No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15367402IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.46E-15368424No hitNo description
PfamPF003201.8E-16369403IPR000679Zinc finger, GATA-type
PROSITE patternPS003440369394IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MPKPTPSSSS FLDFTGGVNG DDDDPSCPFE GLCCPDDPLD QVLNFDSSDF GHVFFESLDV  60
ELFLPRGGPS RGAGEEDSKG AVERVAFGSS AAVESELGGV GGGGAGSEVS VPGGAGGGRG  120
EDMETEALDV KPVVGVGAGG AMGAHVAVGV GAPGAFPESK QLVPWPCAVG AGASAPGAAP  180
DNCLLALPDV RFDALTAEGA APGGERGKTI PDSVSKNGLP TLPGVRSATP TAPPATPFRL  240
EWDHAAAPSS SATTTPSDSS LSSPPSLTSA FPRIARVFPS RTKPRRRCTL RRQHWSLICP  300
LHLVPVAAAA AADDDDAAAR GKSISELNAS ASASAAADAP STNDRGGGSY HRRVVGRQRN  360
RQVRKDRRCS HCGTSETPQW RMGPDGPGTL CNACGIRSKM DRLLPEYRPS TSPSFNGDEH  420
SNRHRKVLKL REKKMRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0198500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286440.0AC128644.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0009F15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1R2J30.0I1R2J3_ORYGL; Uncharacterized protein
STRINGORGLA11G0198500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.12e-26GATA transcription factor 7