PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA11G0187400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27480.3 Da PI: 8.8679 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.2e-17 | 10 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v+++G ++W+ +a+ g ++Rt+k+c++rw +yl ORGLA11G0187400.1 10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGlrgLNRTGKSCRLRWVNYL 60 79***********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.6e-17 | 67 | 111 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr++++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ ORGLA11G0187400.1 67 GRMSPQEEHLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 111 89*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.611 | 5 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 8 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-14 | 9 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 10 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-18 | 11 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.20E-10 | 12 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.812 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.55E-11 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-24 | 68 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MVTVREEMRK GPWTEQEDLQ LVCTVRLFGD RRWDFVAKVS GLRGLNRTGK SCRLRWVNYL 60 HPGLKHGRMS PQEEHLIIEL HARWGNRWSR IARRLPGRTD NEIKNYWRTH MRKKAQERRG 120 DMSPSSSSSS LAYQSCLLDT VPIISMDGGD IHDDRSCMAR VLKSTQSVMD GYTMDQIWRE 180 IEAPGAPSLL GIDEGKDKAC SNLPCPLLTS TMSDYSCPEV FWKIDNEGTR MLATQSGYGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 7 | 115 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA11G0187400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111626 | 0.0 | AK111626.1 Oryza sativa Japonica Group cDNA clone:J013113N19, full insert sequence. | |||
GenBank | DQ075260 | 0.0 | DQ075260.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-3 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025877324.1 | 1e-167 | myb-related protein MYBAS1 isoform X1 | ||||
Swissprot | Q53NK6 | 1e-168 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | I1R282 | 1e-179 | I1R282_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0187400.1 | 1e-179 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 3e-73 | myb domain protein 59 |
Publications ? help Back to Top | |||
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