PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA11G0184400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 135aa MW: 15351.2 Da PI: 9.1215 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.3 | 1.6e-15 | 6 | 74 | 55 | 127 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWk.atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++w++F ++d r+t sgyWk a g+ v+s++++ vglkk++ fy+gr+p+g+kt+W ++e+ ORGLA11G0184400.1 6 GERWFYFRQHDG-----WMMDRSTPSGYWKtAAGTASFVYSADRHPVGLKKSMLFYRGREPSGRKTKWKIDEFW 74 467888877755.....5689*********778999999999******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.821 | 1 | 113 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-16 | 6 | 85 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-6 | 9 | 73 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MGAGAGERWF YFRQHDGWMM DRSTPSGYWK TAAGTASFVY SADRHPVGLK KSMLFYRGRE 60 PSGRKTKWKI DEFWALDNAA NGSEELLAQL CRSRQNVGLM PRFPLSLCRL YSTKSSSERH 120 VLATSSNEIS EDESD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA11G0184400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 1e-141 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615335.1 | 3e-78 | disease resistance protein RGA5-like isoform X1 | ||||
Refseq | XP_015615336.1 | 3e-78 | disease resistance protein RGA5-like isoform X1 | ||||
TrEMBL | I1R252 | 1e-96 | I1R252_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0184400.1 | 2e-97 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP26899 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 6e-22 | NAC domain containing protein 90 |