PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0125600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 300aa    MW: 32971.5 Da    PI: 6.6727
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0125600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1202.1e-37181481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        l pGfrF+Ptd+elv +yL +++ + +l++  +i++vdi++++Pwd+   v+++ek  +fF++++ ky+ ++r+nr++ +g+W+a g++ ++
  ORGLA11G0125600.1  18 LLPGFRFRPTDDELVIKYLYPRAFHVPLPC-AIITDVDIHQHNPWDIV-PVAEREKGKHFFTRKEVKYPGSRRSNRVAGNGFWRAAGSEVPI 107
                        579***************************.88**************5.567789999********************************** PP

                NAM  93 lsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + k     ++ lvg+++tLvf+ g+++++e+t+W mhe++l
  ORGLA11G0125600.1 108 YYKpegaaDDMLVGMRRTLVFHYGKSRSAERTEWAMHEFQL 148
                        **9877776777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-4111155IPR003441NAC domain
PROSITE profilePS5100539.18518217IPR003441NAC domain
PfamPF023651.4E-1920148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MANTGLSIPM VNGATINLLP GFRFRPTDDE LVIKYLYPRA FHVPLPCAII TDVDIHQHNP  60
WDIVPVAERE KGKHFFTRKE VKYPGSRRSN RVAGNGFWRA AGSEVPIYYK PEGAADDMLV  120
GMRRTLVFHY GKSRSAERTE WAMHEFQLAG AGLLPHPMMR RATSNGSEPP CGCLEATIAK  180
KSDGLSATLR AKRDSAPLMR IMVEPDSSWV ICCIYKKRQR APPVVIPPVI GDVGEAIIPH  240
AIGDAREGQL HFIDFLGQPA RNDPSSPHSC TIDPSSLEEG SDESAGDGED KDGDGMNEAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-291414811140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0125600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1073690.0AK107369.1 Oryza sativa Japonica Group cDNA clone:002-127-B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.10.0NAC transcription factor 25
TrEMBLI1R0G40.0I1R0G4_ORYGL; Uncharacterized protein
STRINGORGLA11G0125600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-34NAC domain containing protein 83