PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0124900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 774aa    MW: 81093.3 Da    PI: 6.5943
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0124900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.41.2e-1304037731374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfse 86 
                        lv+lLl+cA+ vs+gd+ +a + L  l+  asp gd+mqR+a++f+ ALaarl+  +s ++++ +p++++         s e+l++++++++
  ORGLA11G0124900.1 403 LVHLLLACADLVSKGDHPAALRHLHLLRRVASPLGDSMQRVASHFADALAARLSLLSSPTSASPSPRAAAAAApypfppSPETLKVYQILYQ 494
                        68****************************************************9888888888888888777899**************** PP

               GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                        ++P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+       +++etg+ La++A++l+vpfef
  ORGLA11G0124900.1 495 ACPYIKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PPAAVRETGRHLASLAASLRVPFEF 582
                        ***************************************************************....99*********************** PP

               GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                        ++ +a+rle l++ +L+ + gEalaVn v +lhr++      +s+ + +L+++++  Pk++++veqea hn++ Fl rfleal+yysa+fds
  ORGLA11G0124900.1 583 HAAAADRLERLRPAALHRRVGEALAVNAVNRLHRVP------SSHLPPLLSMIRDQAPKIITLVEQEAAHNGPYFLGRFLEALHYYSAIFDS 668
                        **9999*****************************9......445566******************************************** PP

               GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                        l+a++p+es +r+kvE+ ll++ei+nvvacegaer++rhe+le+Wr+ +e  GF++vpls  a+ q + ll  ++ +dgyr+ e+sg+l+lg
  ORGLA11G0124900.1 669 LDATFPAESTARMKVEQCLLAPEIRNVVACEGAERVARHERLERWRRLMEGRGFEAVPLSAAAVGQSQVLLGLYGaGDGYRLTEDSGCLLLG 760
                        ******************************************************************************************** PP

               GRAS 362 WkdrpLvsvSaWr 374
                        W+dr+++++SaWr
  ORGLA11G0124900.1 761 WQDRAIIAASAWR 773
                        ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.536377752IPR005202Transcription factor GRAS
PfamPF035144.0E-128403773IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MAGGGAKLQQ QQAPTSPTAS VSESNIVAST ASADPEANDA LAGLQALRFD GGGGGGDIDD  60
VEIQSPDIAL WESIFADQIG VSGAGADFLL SMSSAAASPR RDFMACSPKR DYMVTTSSPK  120
RDYMVTSSPK RDYMVSSPKR EYMVTSPRRE MATSPRRATF SNLYTSSHGG GGGGGHHLHH  180
QSYVHGGGME GGGGGHGAQP QYGGLAGHGK GKAQSPLHKV YINNVGGGSG GGGVKSNTPS  240
TLSCSSSYVV HGGESGLPSL PSMDPFLEEG YLGSYQLPEK AAGGVGGGGG GDINGSGASV  300
SVVTAPGSSQ LLPTLSECLA MPEPAAYRGG GDEAVAAAMA VAGELPVGAF VQPELYYGGG  360
GEFGEGMTPP LQHQMAADSS LHSMLGSVIQ SEAEQEQDSG LQLVHLLLAC ADLVSKGDHP  420
AALRHLHLLR RVASPLGDSM QRVASHFADA LAARLSLLSS PTSASPSPRA AAAAAPYPFP  480
PSPETLKVYQ ILYQACPYIK FAHFTANQAI FEAFHGEDRV HVVDLDILQG YQWPAFLQAL  540
AARPGGPPTL RLTGVGHPPA AVRETGRHLA SLAASLRVPF EFHAAAADRL ERLRPAALHR  600
RVGEALAVNA VNRLHRVPSS HLPPLLSMIR DQAPKIITLV EQEAAHNGPY FLGRFLEALH  660
YYSAIFDSLD ATFPAESTAR MKVEQCLLAP EIRNVVACEG AERVARHERL ERWRRLMEGR  720
GFEAVPLSAA AVGQSQVLLG LYGAGDGYRL TEDSGCLLLG WQDRAIIAAS AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-8441077226378Protein SCARECROW
5b3h_A8e-8441077225377Protein SCARECROW
5b3h_D8e-8441077225377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0124900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1363770.0AC136377.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBa0028G07, complete sequence.
GenBankAC1377590.0AC137759.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0008H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616711.10.0DELLA protein RHT-1
TrEMBLI1R0F70.0I1R0F7_ORYGL; Uncharacterized protein
STRINGORGLA11G0124900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-92RGA-like 1