PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0112800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 446aa    MW: 48194.4 Da    PI: 8.5087
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0112800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38e-116184326
                       S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                       ++ C++++rtG C++G +CkF+H+
  ORGLA11G0112800.1 61 EPDCSYYMRTGLCRFGMTCKFNHP 84
                       789********************8 PP
2zf-CCCH38.81.5e-12106130327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tGtCk+G++CkF+H++
  ORGLA11G0112800.1 106 QPECQYYLKTGTCKFGATCKFHHPR 130
                        799********************96 PP
3zf-CCCH36.67.6e-12152176327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C +++rtG+Ck+G++CkF+H++
  ORGLA11G0112800.1 152 EKECAYYLRTGQCKFGSTCKFHHPQ 176
                        679********************97 PP
4zf-CCCH39.59.2e-13313338227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+f+++tG Ck+G+ CkF+H++
  ORGLA11G0112800.1 313 DQPECQFYMKTGDCKFGAVCKFHHPK 338
                        689*********************96 PP
5zf-CCCH38.42.1e-12358384127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C f++r+G+Ck+G++CkF H++
  ORGLA11G0112800.1 358 PGEPICTFYSRYGICKFGPNCKFDHPM 384
                        5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8685886IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-45885IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-86184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-56386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-46485IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244103131IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10106130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6106132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5109131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-6149177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619149177IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5149176IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9152176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4155175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511311339IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5311338IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9313338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5314339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4317338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6356383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178357385IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7357384IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9359384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4362382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEVAEA MWQMNLGEAM EAGPYPERIG  60
EPDCSYYMRT GLCRFGMTCK FNHPADRKMA VAAARMKGEY PQRIGQPECQ YYLKTGTCKF  120
GATCKFHHPR EKAAMATRVQ LNALGYPLRP NEKECAYYLR TGQCKFGSTC KFHHPQPSNT  180
MVAVRGSVYS PGQSVTSPSQ HTYPGAVTNW PLSRSASFIA SPRWPGHSSY AQVIVPPGLV  240
QVPGWNPYAA QIGSSSSDDQ QRTAGGAQYY TGSRHSETPN MGDQGMFSSY QAGSVPLGLY  300
TVQRESIFPE RPDQPECQFY MKTGDCKFGA VCKFHHPKER IIPTPNCALS SLGLPLRPGE  360
PICTFYSRYG ICKFGPNCKF DHPMGTVMYG LATSPTGDVS ARRMLAPVPA HSEVSPDNVS  420
GRSRRITHSD SQQIPSGERG TEREAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0112800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLI1R0360.0I1R036_ORYGL; Uncharacterized protein
STRINGORGLA11G0112800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]