PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0040400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 321aa    MW: 32657.9 Da    PI: 5.417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0040400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20131180255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++ a+++++g
  ORGLA11G0040400.1 131 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAARAYDDAALRFRG 180
                        8********.**********64....55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.32E-20130190No hitNo description
Gene3DG3DSA:3.30.730.105.1E-32131189IPR001471AP2/ERF domain
PROSITE profilePS5103225.515131188IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22131189IPR016177DNA-binding domain
SMARTSM003807.9E-36131194IPR001471AP2/ERF domain
PfamPF008472.0E-13131180IPR001471AP2/ERF domain
PRINTSPR003677.3E-12132143IPR001471AP2/ERF domain
PRINTSPR003677.3E-12154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MCGGGKVASP PGPRLPRLAG AGGEEEEEEA AAGMLSRHGQ AREMSVMVSA LARVVAGGGG  60
GEAEEWWPPA YGAAPLPPST SPASHEHAAA TAAGQYAPAT SSAMASPREQ ASSPSSGDAA  120
GGGGGGGGRK RYRGVRQRPW GKWAAEIRDP VKAARVWLGT FDTAEAAARA YDDAALRFRG  180
CRAKLNFPED AALLPPPPPP PAPAPTPTPP QSQGMVGVGE EYSEYARFLQ GAGEPPHFLE  240
QIMEDSPRPS TAAGASSSSS GQSSFPLFYS FAGHELGGNE ANLARPPESG GAGGDGGRGS  300
SPPATWPGYG WGAPPPWDPS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22130188463ATERF1
3gcc_A1e-22130188463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133GRKRYRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0040400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205270.0AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence.
GenBankAC1478120.0AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617618.11e-134ethylene-responsive transcription factor ERF110
TrEMBLI1QY120.0I1QY12_ORYGL; Uncharacterized protein
STRINGORGLA11G0040400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169991212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-23ethylene response factor 110