PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0027100.1
Common NameOgl11g0041H03_3
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 451aa    MW: 50622.3 Da    PI: 4.4204
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0027100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.77.2e-30371721128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknra.....tksgyWka 85 
                        lppG++F Ptdeelv++yL+ k+eg++ +  ++i+e +i++++P++L +k+k+ +e++wyfF+ r+ ++++ ++++nr+     +++g W+a
  ORGLA11G0027100.1  37 LPPGYHFVPTDEELVDFYLRGKIEGRDPPR-RFISEENIMRYDPQKLIEKYKGyGEDRWYFFMVREPSKTKkKDEPNRKvvvdgVEEGSWSA 127
                        79*************************998.89**************8655553777*****9998776642779999656666679***** PP

                NAM  86 tgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        tg+  +++s+    +++ +g k++L++   +a+++e+  W mhey l
  ORGLA11G0027100.1 128 TGSVVQIHSTketnRKAIIGSKRVLTYK--SARSAENDMWSMHEYVL 172
                        ********9866655666*********9..5666669********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3430189IPR003441NAC domain
PROSITE profilePS5100535.58537189IPR003441NAC domain
PfamPF023651.8E-1838172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MNPTMENGGS GGDGSAAAAA AEGSAIWKSE LVPQLQLPPG YHFVPTDEEL VDFYLRGKIE  60
GRDPPRRFIS EENIMRYDPQ KLIEKYKGYG EDRWYFFMVR EPSKTKKKDE PNRKVVVDGV  120
EEGSWSATGS VVQIHSTKET NRKAIIGSKR VLTYKSARSA ENDMWSMHEY VLAGKSQMGQ  180
YVLCAIQLKQ TYEREEKARE EQKNDNKRNK KAARRKNMQQ QPTACQAQDE QQETAPTPGE  240
ETIVDPDQFM DIAHSMHMMF GGVDQDAPPF MPSLIAPCNN DDGMLQLQPL QLQNPNPAML  300
YSNQLEPSYV GDQSMFTPCC CGRNCISCRQ LQFYQQQQAE DGSVAFGEAD LYQQHDRALG  360
NTGVYPDNVW VDGNMADYAQ RQIYNDQDNG GVLMQGPEDS ATFPDNFLML DEMAAGSDDA  420
SGFDYEVDQS RAVVPHVADQ TVDDIMSSLL N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-173219112167NO APICAL MERISTEM PROTEIN
1ut4_B4e-173219112167NO APICAL MERISTEM PROTEIN
1ut7_A4e-173219112167NO APICAL MERISTEM PROTEIN
1ut7_B4e-173219112167NO APICAL MERISTEM PROTEIN
3swm_A4e-173219115170NAC domain-containing protein 19
3swm_B4e-173219115170NAC domain-containing protein 19
3swm_C4e-173219115170NAC domain-containing protein 19
3swm_D4e-173219115170NAC domain-containing protein 19
3swp_A4e-173219115170NAC domain-containing protein 19
3swp_B4e-173219115170NAC domain-containing protein 19
3swp_C4e-173219115170NAC domain-containing protein 19
3swp_D4e-173219115170NAC domain-containing protein 19
4dul_A4e-173219112167NAC domain-containing protein 19
4dul_B4e-173219112167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0027100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3780340.0FQ378034.1 Oryza glaberrima chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697555.11e-97PREDICTED: putative NAC domain-containing protein 94
TrEMBLG2XMS90.0G2XMS9_ORYGL; Hypothetical_protein
STRINGORGLA11G0027100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-22NAC-like, activated by AP3/PI