PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0022300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 363aa    MW: 40134.9 Da    PI: 8.6285
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0022300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.35.3e-18171432126
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgk.....rknr.atksgyW 83 
                        p G+ F P+ e+++ +yL++ ++g+++e+  ++++e+d+y ++P +L +   ++ ++ k+wyf + ++ k  +g      r nr +   g+W
  ORGLA11G0022300.1  17 PSGYFFVPKPEQIIRDYLNHWITGRPIEElRDIVREADVYGSDPATLTEehsAYGHDGKSWYFLTVAKWKGGRGGagtagRINRcVEGGGTW 108
                        89************************87725569999**********8434444457789*****99999884434445599**666699** PP

                NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                        +++ + + +        g ++ + +   rap  +ktdW+m+e 
  ORGLA11G0022300.1 109 HNSQRRRVIEG-----YGDRQAFEY---RAPGNKKTDWLMEEI 143
                        *9988666654.....899999998...599999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-2114165IPR003441NAC domain
PROSITE profilePS5100521.48716165IPR003441NAC domain
PfamPF023654.6E-1017142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAEEDDKKQK GPDVTVPSGY FFVPKPEQII RDYLNHWITG RPIEELRDIV READVYGSDP  60
ATLTEEHSAY GHDGKSWYFL TVAKWKGGRG GAGTAGRINR CVEGGGTWHN SQRRRVIEGY  120
GDRQAFEYRA PGNKKTDWLM EEIASNLPAA ITDEGIMVIC KVYLSPRAKE ATADDEERQE  180
TNVVPGPKRL REAEATGYDA PAPPQPDVGC SYSDGSETSQ ATASMDYFAA RRRHTRRTTR  240
PMPPTTTATL MPSSQMLTTA ATTASASTQT GSWFSAATAT VASGRRDRCH WQCRTPTGRX  300
PCSHQXTAMV LASMRRXDKN HKXKVRWRWI ISSTICSSTS TAPVISIPIP TGVETATATY  360
YVN
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0022300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664975.17e-75PREDICTED: NAC domain-containing protein 76-like, partial
TrEMBLI1QXI10.0I1QXI1_ORYGL; Uncharacterized protein
STRINGORGLA11G0022300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.14e-10NAC domain containing protein 63