PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA11G0014100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 84aa MW: 9455.93 Da PI: 4.5847 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 51 | 4.8e-16 | 19 | 67 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50 lppGfrFhPtd e++ yL +k + +++ i evd++k+ePwdLp+k ORGLA11G0014100.1 19 LPPGFRFHPTDAEVILSYLLQKFLNPSFTS-LPIGEVDLNKCEPWDLPSK 67 79*************************888.56**************943 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-16 | 15 | 68 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 16.932 | 19 | 84 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-6 | 20 | 62 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MVETSTSLVK LEQDGSLFLP PGFRFHPTDA EVILSYLLQK FLNPSFTSLP IGEVDLNKCE 60 PWDLPSKPQV SYAYILNSLL LSRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA11G0014100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123525 | 1e-140 | AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence. | |||
GenBank | AP014967 | 1e-140 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 1e-140 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615868.1 | 1e-40 | NAC domain-containing protein 45 | ||||
Swissprot | Q2RB33 | 1e-41 | NAC45_ORYSJ; NAC domain-containing protein 45 | ||||
TrEMBL | I1QX99 | 1e-53 | I1QX99_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0014100.1 | 2e-54 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25541 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-22 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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