PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA10G0168100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 310aa MW: 34251.3 Da PI: 7.8069 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32 | 2.3e-10 | 226 | 266 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR+riN ++ L++l+P+ +K++ +++Le+Av+Y+k Lq ORGLA10G0168100.1 226 RRRRERINGRLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 266 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-13 | 214 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.488 | 216 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-11 | 220 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-11 | 222 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-7 | 226 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.86E-7 | 232 | 270 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MAVDWIWERR RREEEYNHQM SQDELQQPGQ VQWTPAPEEK SEIAVQFFTA PYPCQNGQLD 60 HGEHHALGGI GACSSVHWQP DRATCYWPPP LSGDGGGGSG SGSSGTGEGG YIGERCYYVG 120 EPDVPIGLNL LVGDNDGAGV VLRDAAPQAK RRTQAGHGGD LGRQKKKARV SDKRNQESMQ 180 SGSCSDNESN CSQVNRRKVD RVAGGGNGKV PARRRSATIA QSLYARRRRE RINGRLRILQ 240 KLVPNGTKVD ISTMLEEAVH YVKFLQLQIK VEVQIVCHDQ MLSSDELWMY APIVYNGMDL 300 GIDLNISPPR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 12 | ERRRRE |
2 | 212 | 228 | RRRSATIAQSLYARRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA10G0168100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631804.1 | 0.0 | transcription factor BHLH089-like isoform X1 | ||||
Refseq | XP_025879771.1 | 0.0 | transcription factor BHLH089-like isoform X1 | ||||
TrEMBL | I1PFS6 | 0.0 | I1PFS6_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0322200.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | ORGLA10G0168100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14445 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-34 | bHLH family protein |