PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA10G0137400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 265aa MW: 29289.1 Da PI: 7.0659 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 100 | 144 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++++ +qlG+g+W+ I++ + + Rt+ q+ s+ qky ORGLA10G0137400.1 100 PWTEEEHKKFLEGLRQLGKGDWRGISKNFVTSRTATQVASHAQKY 144 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.878 | 93 | 149 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-18 | 94 | 149 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-18 | 96 | 148 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.3E-12 | 97 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-12 | 97 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-13 | 100 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-10 | 100 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MEQHEEAAER KPSPPVMFRL FGVEVRGGGG GVDEEEYEEE EVEGGLFIKK SSSMPNLTSI 60 DPLPVPADGG KRRASDDSEL ASGQQKRRRR KVQERKKGVP WTEEEHKKFL EGLRQLGKGD 120 WRGISKNFVT SRTATQVASH AQKYFLRQTN PGKKKRRASL FDVVAECSDD QLPSPQSVGT 180 KPPTQDIIHT DRGDVPILSY PVARGFRGDS VQVDELTEYV KRLKAAEDMS LSMISGLEMA 240 SSSISSLELS IAPPHCAIEA AIKVL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 90 | KRRASDDSELASGQQKRRRRK |
2 | 85 | 90 | KRRRRK |
3 | 85 | 96 | KRRRRKVQERKK |
4 | 86 | 96 | RRRRKVQERKK |
5 | 152 | 156 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}. | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA10G0137400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288986 | 0.0 | AK288986.1 Oryza sativa Japonica Group cDNA, clone: J090086G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612867.1 | 0.0 | transcription factor MYBS2 | ||||
Swissprot | B8BI93 | 0.0 | MYBS2_ORYSI; Transcription factor MYBS2 | ||||
Swissprot | Q7XC51 | 0.0 | MYBS2_ORYSJ; Transcription factor MYBS2 | ||||
TrEMBL | A0A0D3HGM5 | 0.0 | A0A0D3HGM5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1QVZ1 | 0.0 | I1QVZ1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA10G0137400.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART10G18600.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10464 | 30 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 3e-31 | MYB_related family protein |
Publications ? help Back to Top | |||
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