PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA10G0119200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26251 Da PI: 9.7803 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.8 | 8.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++g+lye++s ORGLA10G0119200.1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 63 | 1.1e-21 | 79 | 171 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++++ +++ ++ + + L k++e L ++ R++lGe+Le +s++eL+ Le +Leksl +iR kK+ell +qi +l++ke+ l ++n++Lr k ORGLA10G0119200.1 79 NNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLEQQIAKLKEKERTLLKDNENLRGK 170 445678889999*****************************************************************************988 PP K-box 98 l 98 ORGLA10G0119200.1 171 H 171 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.314 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-31 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.26E-41 | 3 | 79 | No hit | No description |
Pfam | PF00319 | 4.6E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-21 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.617 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVRGRTELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGRLYEFASA 60 PSLQKTIDRY KAYTKDHVNN KTIQQDIQQV KDDTLGLAKK LEALDESRRK ILGENLEGCS 120 IEELRGLEMK LEKSLHNIRL KKTELLEQQI AKLKEKERTL LKDNENLRGK HRNLEAAALV 180 ANHMTTTTAT AAWPRDVPMT SSTAGAADAM DVETDLYIGL PGTERSSNRS ETG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 1 | 77 | 1 | 76 | MEF2C |
5f28_B | 1e-17 | 1 | 77 | 1 | 76 | MEF2C |
5f28_C | 1e-17 | 1 | 77 | 1 | 76 | MEF2C |
5f28_D | 1e-17 | 1 | 77 | 1 | 76 | MEF2C |
6byy_A | 1e-17 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6byy_B | 1e-17 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6byy_C | 1e-17 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6byy_D | 1e-17 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6bz1_A | 1e-17 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6bz1_B | 1e-17 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6bz1_C | 1e-17 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6bz1_D | 1e-17 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA10G0119200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF141965 | 0.0 | AF141965.1 Oryza sativa MADS-box protein FDRMADS8 mRNA, complete cds. | |||
GenBank | AK070135 | 0.0 | AK070135.1 Oryza sativa Japonica Group cDNA clone:J023043P08, full insert sequence. | |||
GenBank | AY551919 | 0.0 | AY551919.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS214 mRNA, complete cds. | |||
GenBank | CT832559 | 0.0 | CT832559.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008N04, full insert sequence. | |||
GenBank | EU519229 | 0.0 | EU519229.1 Oryza sativa Indica Group cultivar MR84 MADS-box protein UMS1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614799.1 | 1e-168 | MADS-box transcription factor 56 | ||||
Swissprot | A2Z9Q7 | 1e-171 | MAD56_ORYSI; MADS-box transcription factor 56 | ||||
TrEMBL | A0A0D3HG17 | 1e-170 | A0A0D3HG17_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1QVF9 | 1e-170 | I1QVF9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA10G0119200.1 | 1e-171 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 8e-70 | AGAMOUS-like 19 |