PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0084800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 402aa    MW: 42948.8 Da    PI: 6.724
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0084800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.34.6e-172813919127
                NAM  19 Lkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya...tgkrknratksgyWkatgkdkevlskkgelvglk 103
                        L  k++g +    l+ v+++++i++++P +L  + ++ ee+  +yfFs+ + k+a   ++k ++ra++ g+Wka   + ++++ +g  vg k
  ORGLA10G0084800.1  28 LDDKLRGAPldRALDAVFHDTRILDFHPAKLYgMYAEDEENgYIYFFSTIEFKAAkpkQKKWPRRAAQGGRWKAVLGSSQMVEVGGVPVGRK 119
                        667777777433334569*************83344444443459**998777663335778899********88666666666******** PP

                NAM 104 ktLvfykgrapkgektdWvmheyr 127
                         ++ fy     kg++t+W mhe+ 
  ORGLA10G0084800.1 120 LSMEFY----VKGVRTNWGMHEFV 139
                        ******....899*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.37210159IPR003441NAC domain
SuperFamilySSF1019416.02E-2229157IPR003441NAC domain
PfamPF023651.9E-643138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
GREREEQARV PARLPLRAPG TRSSSNILDD KLRGAPLDRA LDAVFHDTRI LDFHPAKLYG  60
MYAEDEENGY IYFFSTIEFK AAKPKQKKWP RRAAQGGRWK AVLGSSQMVE VGGVPVGRKL  120
SMEFYVKGVR TNWGMHEFVR IIGPNIEVAD LAVYRLHKLW TNGEEKPGDL AADVAKSTNQ  180
SGQASAADYY QTYQNAVSQA YAYAPPYVLQ PGWSQGYPYD VAAAPPTAPW PVCWAPPSAP  240
GSYDCCYAST FSRPPPPPPI AASTLDKAPI TSTDHGASTN TSAATPAANN KPPPPPVAAT  300
ATTLGKKGEG KGKAPTTTST DHAGSTNTSA PPAANYQPPP LQGTQHVFAS GVVIGHEDEE  360
GYLVVDEVNT WRNTQQLVLE DDDDGRAAVA GAGEGGASAS GR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0084800.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099040.0AK109904.1 Oryza sativa Japonica Group cDNA clone:002-149-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614522.10.0uncharacterized protein LOC4348616
TrEMBLI1QUG50.0I1QUG5_ORYGL; Uncharacterized protein
STRINGORGLA10G0084800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.11e-07NAC domain containing protein 3