PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA10G0075700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 532aa MW: 57356.9 Da PI: 4.6413 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.4 | 9.6e-26 | 36 | 172 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya..tgkrknratksgyWkatg 87 +p+G F P+d el +k v+g+ l++v+++++i++++P L+++++++e+ +yfFskr+ +++ +++r++r++k g+Wka+g ORGLA10G0075700.1 36 MPVGWYFVPKDLELFAILRCKLVRGQLpSALNNVFEHIRILEFHPALLHETYSGNEEdgYIYFFSKRQFTTKagNKRRPTRVAKGGTWKASG 127 699************7766666777663444556999***********9544443333366****99865553378899************* PP NAM 88 kdkevlsk..kgelvglkktLvfyk...grapkgektdWvmheyr 127 +k+v sk +g ++g k t+vfy+ ++++++ kt+W mhe++ ORGLA10G0075700.1 128 GSKTVRSKkvGGIDIGQKLTMVFYErrfEDDRNPIKTNWGMHEFT 172 ******99888889**********62224677888********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-34 | 30 | 196 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.552 | 36 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-13 | 37 | 172 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MAEQPPEGSG GGGNNNGKWK GKEKVVPEYG KNRHGMPVGW YFVPKDLELF AILRCKLVRG 60 QLPSALNNVF EHIRILEFHP ALLHETYSGN EEDGYIYFFS KRQFTTKAGN KRRPTRVAKG 120 GTWKASGGSK TVRSKKVGGI DIGQKLTMVF YERRFEDDRN PIKTNWGMHE FTKIIDGTKN 180 QLEDLAVYRL YKIKRKEDEE PSNTAAAASS TDEPSTSSAL PPPTPPRPLP DMAGPSSATP 240 LLPLQLPGLA GSSSAMSLPA LQLSGMAGSS SAMPLPPLSL PGLAGGMMSM ADQANMASTS 300 QASTPSSDLL QDWYDEFEIT YGAVAPPSPS TISWVAPQSS PTGWWPSPNG GPVQHDGYLG 360 MAADPTSYML ENLLPTAAIP PEPMMPPTSS PAPPPAVDHH HRLSPPHDAA GSNYNHPELA 420 DYNGGVQAQH EHQYHPQEPQ ASLVDAEDGY SAMAGGDDAQ LGGAELDTER IAEMVNHIMD 480 GEFEFKFEDN TVLKYNEVFP DNDEVVAAPM MIDGGRDGDG ADGGDGDDPF DN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA10G0075700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC092388 | 0.0 | AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence. | |||
GenBank | AC122144 | 0.0 | AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613639.1 | 0.0 | NAC transcription factor NAM-B2 | ||||
TrEMBL | I1QU74 | 0.0 | I1QU74_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA10G0075700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 4e-14 | NAC family protein |