PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0059100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 393aa    MW: 43702 Da    PI: 4.799
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0059100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.81.1e-152012810128
                NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                        +deelv ++L+++ e+++l++ +v+  ++i  ++P++ +       + wy  Fs   ++ ++g+++  + k+gyWk  g+ +  +  ++  v
  ORGLA10G0059100.1  20 SDEELV-RFLAERKEAHSLPE-NVFVGMNISLIDPRNSE-------DIWYMnFSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPT--STVIV 100
                        69****.99999999999999.89***********9874.......5687626666666666777777999********966554..5899* PP

                NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                        g+k tL  y+g+ap+g++t Wvm+ey +
  ORGLA10G0059100.1 101 GMKVTLDHYEGKAPSGKRTGWVMDEYLI 128
                        **************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.9911149IPR003441NAC domain
SuperFamilySSF1019413.27E-2418149IPR003441NAC domain
PfamPF023658.9E-820126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSSKVPGLAL LNTSISKFWS DEELVRFLAE RKEAHSLPEN VFVGMNISLI DPRNSEDIWY  60
MNFSDDPQSP KNGENAIIKS KTGYWKVVGT VRIPTSTVIV GMKVTLDHYE GKAPSGKRTG  120
WVMDEYLIEQ NDEANLPQDY KNLCTIFFQG DDILNAGDKQ ICLNANVPNE RKEFYLQYLA  180
ELEEQNAAWN NQAVSVNEQD VSSSKGLDGQ KTSAADDQSV NHAPSREGYI ELNDFLNSDS  240
SASTSEYSSQ RTMISEEYFD SDAFLREIRN DHNAADEEHT DSKFSVAAAS KSDCVVISPP  300
EQGFVNNLDN HATIVGDSPL KSVKNDKVDE HSSEEHPQHS PTTSCFPSHV KRSLSSSSSS  360
SQGTSNSKSP QRQRERSTKK IGKLGKYWCC GSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0059100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0726820.0AK072682.1 Oryza sativa Japonica Group cDNA clone:J023135B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614544.10.0protein ATAF2 isoform X1
TrEMBLI1QTQ80.0I1QTQ8_ORYGL; Uncharacterized protein
STRINGORGLA10G0059100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.19e-15NAC domain containing protein 53