PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA09G0156000.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 339aa MW: 36509.1 Da PI: 6.9497

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0156000.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.4	6.8e-12	25	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr...t 72 +W+++ + L+ea++ ++ +r+klk +W +++ + ++p+qCk+k+e+++kry+++ + + + + ORGLA09G0156000.1 25 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcamenaaaaaatgkPGSSTAKTPNQCKNKIESMKKRYRAESAAAARAgpaA 116 5*****************************9999999999******9977778899****************998887763324 PP trihelix 73 sessstcpyfdqle 86 +++ ++++f +++ ORGLA09G0156000.1 117 AGAGPSWRFFARMD 130 66678999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-13	23	131	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MDALPDAADA APLAAAAAPP QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWVDIAH 60 EVSAHCAMEN AAAAAATGKP GSSTAKTPNQ CKNKIESMKK RYRAESAAAA RAGPAAAGAG 120 PSWRFFARMD GLLKGPAGSG QPQAELSNSI DLRAPPPAKV EVDVDADFVS QLADAGPGAL 180 SELVSAYANG SIQEKLDKVE NSGQVEGRAA ESDVNVSSPR IKEANEDAEE VDKVWDMSKK 240 RKNTEFDIAK SIELLASSFL KIERARMDLY RETERMRVEA EIKKGEMELK RTEIMAKTHL 300 QIAKLFAKRL KECSSKTGGS SSVTAEVDNH AKKGENGSG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0156000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612002.1	0.0	trihelix transcription factor ASIL1
TrEMBL	A0A0E0B6I2	0.0	A0A0E0B6I2_9ORYZ; Uncharacterized protein
TrEMBL	I1QR81	0.0	I1QR81_ORYGL; Uncharacterized protein
STRING	OGLUM09G20110.1	0.0	(Oryza glumipatula)
STRING	ORGLA09G0156000.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-47	sequence-specific DNA binding transcription factors