PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0137500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 285aa    MW: 31171.9 Da    PI: 6.1653
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0137500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.2e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+eEd++l   +   G  +W+++++  g+ R++k+c++rw +yl
  ORGLA09G0137500.1 14 RGPWTAEEDKKLMSFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                       89******************************99************97 PP
2Myb_DNA-binding53.26.7e-1770111447
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         T  E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  ORGLA09G0137500.1  70 LTDAEEQLVIDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 111
                        5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-20562IPR009057Homeodomain-like
PROSITE profilePS5129412.116961IPR017930Myb domain
SuperFamilySSF466891.4E-2611108IPR009057Homeodomain-like
SMARTSM007176.4E-111363IPR001005SANT/Myb domain
PfamPF002495.9E-141461IPR001005SANT/Myb domain
CDDcd001671.76E-81661No hitNo description
PROSITE profilePS5129428.03262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2563117IPR009057Homeodomain-like
SMARTSM007172.2E-1566114IPR001005SANT/Myb domain
PfamPF002498.1E-1570111IPR001005SANT/Myb domain
CDDcd001672.00E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRQPCCDKL GVKRGPWTAE EDKKLMSFIL TNGHCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL TDAEEQLVID LHAKLGNRWS KIAAKLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPVTHEPLD RKQESPATTS QSTVTAESSK SGEATRQQSR QLDDAVVRDM SVSAGGDSPP  180
ESSTNTASTA GGSSSSSSSH HQDPLVKWLL EEDLLPTGDE PWLNFTASND VDEFSSIAAT  240
GATPALPWDV GMTTDWLLDY QDFGMGDSSL VVDASMVNSS NGSNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0137500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117400.0AK111740.1 Oryza sativa Japonica Group cDNA clone:J023047I22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612200.10.0protein ODORANT1
RefseqXP_015612203.10.0protein ODORANT1
RefseqXP_015612204.10.0protein ODORANT1
RefseqXP_015612205.10.0protein ODORANT1
RefseqXP_015612206.10.0protein ODORANT1
RefseqXP_015612207.10.0protein ODORANT1
RefseqXP_015612208.10.0protein ODORANT1
RefseqXP_015612209.10.0protein ODORANT1
SwissprotQ50EX65e-94ODO1_PETHY; Protein ODORANT1
TrEMBLB8BDU70.0B8BDU7_ORYSI; Uncharacterized protein
TrEMBLI1QQP60.0I1QQP6_ORYGL; Uncharacterized protein
TrEMBLQ69SH80.0Q69SH8_ORYSJ; Os09g0532900 protein
STRINGOS09T0532900-040.0(Oryza sativa)
STRINGORGLA09G0137500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.13e-87myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]