PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0123200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 246aa    MW: 26065.2 Da    PI: 10.1079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0123200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.99.5e-3781421128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkd 89 
                        lppGfrFhPtdeelvv+yL++++ +++l++  vi++v d   ++PwdLp    a++ e yfFs r+ ++a+  g  ++r + sgyWkatg +
  ORGLA09G0123200.1   8 LPPGFRFHPTDEELVVQYLRRRALSRPLPA-AVIPDVhDAAVLDPWDLP---GAGDGEAYFFSFRQLAAASggGGWRRRRAGSGYWKATGAE 95 
                        79****************************.8999999***********...457889*******999986324456666799********* PP

                NAM  90 kevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+v+ +          +++lvg+k+tL f +++ p+  +t+Wvmheyrl
  ORGLA09G0123200.1  96 KPVFLRgfgcggggggGQHLVGVKTTLLFLRAKPPS--RTHWVMHEYRL 142
                        ******99999999877788**********666666..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-424178IPR003441NAC domain
PROSITE profilePS5100544.1918178IPR003441NAC domain
PfamPF023654.1E-239142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MATPGQQLPP GFRFHPTDEE LVVQYLRRRA LSRPLPAAVI PDVHDAAVLD PWDLPGAGDG  60
EAYFFSFRQL AAASGGGGWR RRRAGSGYWK ATGAEKPVFL RGFGCGGGGG GGQHLVGVKT  120
TLLFLRAKPP SRTHWVMHEY RLAAAGAVAV AAAGQTKRGN HSCMAQPGEW VVCRIFLKNN  180
RSSRRRAGDA DGETPVTGVH GHRRRQPSPS PSSSSCVTAE VSDGEGEEEV SSGSINGAPS  240
ASQREA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-31718014170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0123200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605090.0AK060509.1 Oryza sativa Japonica Group cDNA clone:001-019-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651404.11e-136NAC domain-containing protein 83
TrEMBLI1QQA31e-178I1QQA3_ORYGL; Uncharacterized protein
STRINGORGLA09G0123200.11e-179(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-32NAC domain containing protein 83