PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA09G0117400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 38953.5 Da PI: 9.5506 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.7 | 7.7e-56 | 21 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL++k+++ +++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+ ORGLA09G0117400.1 21 LPPGFRFHPTDEELITYYLRQKIADGGFTA-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEI 111 79*************************999.89***************99999*************************************** PP NAM 93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + elvg+kktLvfykgrap+gekt+Wvmheyrl ORGLA09G0117400.1 112 FTGqppaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 151 *9766666677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-64 | 17 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.863 | 21 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-29 | 22 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MAMGMEGSGG GGSAKKKEES LPPGFRFHPT DEELITYYLR QKIADGGFTA RAIAEVDLNK 60 CEPWDLPEKA KMGEKEWYFF SLRDRKYPTG VRTNRATNAG YWKTTGKDKE IFTGQPPATP 120 ELVGMKKTLV FYKGRAPRGE KTNWVMHEYR LHSKSIPKSN KDEWVVCRIF AKTAGVKKYP 180 SNNAHSRSHH PYTLDMVPPL LPALLQQDPF GRGHHPYINP VDMAELSRFA RGTPGLHPHI 240 QPHPGYINPA APFTLSGLNL NLGSSPAMPP PPPPPPQSIL QAMSMPMNQP STTNQVMVTE 300 QMIPGLANGV IPQGTDGGFT TDVVVGGTGI RYQNLDVEQL VERYWPGSYQ M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 20 | 178 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 20 | 178 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 20 | 178 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 20 | 178 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-55 | 20 | 178 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 20 | 178 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA09G0117400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102511 | 0.0 | AK102511.1 Oryza sativa Japonica Group cDNA clone:J033095I08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612624.1 | 0.0 | NAC domain-containing protein 92 | ||||
Refseq | XP_015612625.1 | 0.0 | NAC domain-containing protein 92 | ||||
Swissprot | Q9FLJ2 | 2e-82 | NC100_ARATH; NAC domain-containing protein 100 | ||||
Swissprot | Q9FLR3 | 2e-82 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | I1QQ45 | 0.0 | I1QQ45_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA09G0117400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9361 | 38 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 5e-90 | NAC domain containing protein 38 |
Publications ? help Back to Top | |||
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