PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0101900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 356aa    MW: 37537.3 Da    PI: 6.351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0101900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.4e-14137188155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  ORGLA09G0101900.1 137 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 188
                        79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-13135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.97E-14135192No hitNo description
SuperFamilySSF474592.49E-17136205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.872136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MALEAVLLSR GDLFGRRRCA MEGGGGGGGG GGWSSPFSGF EGVMDLDGGN WDAAACSSML  60
LHGFQEIEIP AAAAAAAAMA PPPPPVEPAN CAENAGGVGD HQEDQAAVAA AATAVQAGRR  120
KRRRARAAKN KEEVESQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYAQR GDQASIVGGA  180
INFVKELEQL LQSLEARKSS RQCAAHDAAA AAAPFASFFT FPQYSMSAAT AAAPVAPVVN  240
EVHGRDDGGA GTAEAEASGS KPSAVADVEV TMVESHANLR VLSRRRPRQL LRLVVALQGH  300
RLTVLHLNMT SAGHMVLYSF SLKVEDDCQL TSVDEIATAA HQIIEKIQEE QGCSLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123RKRRR
2137148RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0101900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612232.10.0transcription factor bHLH94
RefseqXP_015612233.10.0transcription factor bHLH94
SwissprotQ9C7T47e-76BH096_ARATH; Transcription factor bHLH96
TrEMBLI1QPP00.0I1QPP0_ORYGL; Uncharacterized protein
STRINGORGLA09G0101900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]