PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0093800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 438aa    MW: 46053.9 Da    PI: 8.6682
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0093800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573104.58.1e-33189286298
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                        +++r+ws+ De+v+L+Gli++++k+g+   +++di ++++++++++s+kvs++ql++K+rrLK+K+++  ++ak+gke +f ++hd++i++l
  ORGLA09G0093800.1 189 RPSRVWSQADELVILRGLITYRTKRGVlpGSTQDIGKLHSYIRGQLSAKVSTTQLSDKVRRLKQKYQMLATRAKTGKE-VFPTPHDHNIYQL 279
                        678************************888899***************************************999999.9************ PP

             DUF573  92 skkiWgs 98 
                        +kk+Wg+
  ORGLA09G0093800.1 280 AKKVWGT 286
                        *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-27191285IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAPKRPAEEA DAAAGGSASE GSDAEASAEA ARGHGSSPSP SKTPPPANPN PKSAAAPPSA  60
VAAPASAAGS DSGAASGAAS DSPRAAGNPS GPRSIEVNSD SEDSALPLAS DAYADQAAAA  120
GAGAGADSDD GNTSPLPPPR PSRAEAAAIK PISSRPMDPP PRRSAGGSEP RAKRPRSAAV  180
ASSAEHSKRP SRVWSQADEL VILRGLITYR TKRGVLPGST QDIGKLHSYI RGQLSAKVST  240
TQLSDKVRRL KQKYQMLATR AKTGKEVFPT PHDHNIYQLA KKVWGTMSTA GEGGGSGYDN  300
ADAGESEEEQ YGRESDDDME SGRDNRHRKN QRSVPVTMAN GNGTGIGAVN AIVRGRSEFE  360
KGKDVYPYLW ETVEELSSQH PTGAVFKKAF ELLEGSKAQV MEEKLRKFRL TEMRQQLRRM  420
DLMKDTLSMV LDALEMAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0093800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053930.0AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBankAP0055590.0AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611802.10.0STOREKEEPER protein
TrEMBLI1QPF90.0I1QPF9_ORYGL; Uncharacterized protein
STRINGORGLA09G0093800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.15e-15DNA-binding storekeeper protein-related transcriptional regulator