PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA09G0076200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 509aa MW: 50020.9 Da PI: 7.0636 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.7e-11 | 266 | 314 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a ++ +Ka++L + ++Y+k Lq ORGLA09G0076200.1 266 HSIAERLRRERIAERMKALQELVPNA--NKLMQTDKASMLDEIIDYVKFLQ 314 99***********************7..48888*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.98E-12 | 259 | 318 | No hit | No description |
SuperFamily | SSF47459 | 9.95E-16 | 259 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.787 | 261 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-15 | 265 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.3E-9 | 266 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.9E-13 | 267 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MQAMAAAAAA GQISLDDLRN GGGVAANAAG GGGVHDDFLD QMLSSLPPSA WPDLAAGKAA 60 EDDAEGMHHH HHQQQQQFGG PYDESAMLAS RLRQHQISGG GGGGGGGAAA VKQMVLQQLA 120 DLRQGHHMML QGLGGRSPAG GGGGGGDGGL LLPLTLGSGG SGGDVQALLK AAAANSAGGG 180 DAGGVYGGGF AGSLHQQQQH FQPHPQLQTA PTIPTQSFGG GGGGGGGGTA SGGGAAQPQA 240 GAAGGGAPAP PRQRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN ANKLMQTDKA 300 SMLDEIIDYV KFLQLQVKAS TYTKLLIHVL SMSRLGGAAA VAPLVADMSS EGRGGGAANG 360 GAPAAAAAAA GSDSLTVTEQ QVAKLMEEDM GTAMQYLQGK GLCLMPISLA SAISSATCHL 420 RPPVVAAAAA QQFPAGLGAA AAAAHHHQLS AAAAAAMRGH LPGLNADGSV PASPSMSVLT 480 AQSAMANGGG GAADGEGSQL KDAASVSKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | GGRSPAGGG |
2 | 270 | 275 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA09G0076200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005784 | 0.0 | AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610784.1 | 1e-180 | transcription factor UNE12 isoform X1 | ||||
TrEMBL | I1QNY3 | 0.0 | I1QNY3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA09G0076200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 3e-44 | LJRHL1-like 1 |