PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0068300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 534aa    MW: 54500.6 Da    PI: 9.4739
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0068300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.6e-32326379255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  ORGLA09G0068300.1 326 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 379
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-15323380IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28324380IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23326379IPR006447Myb domain, plants
PfamPF002491.0E-6327378IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAMVWELELM TSWSNSMGRH RYPTRILFDS FGHKCGASDK GVWTSCSIRT PLQGRGSFRR  60
GANIRFGSLP SSAAVATSGG GRGGGGVVVG GGGGDPWRRL DGSTASTELS LSPPPAQAAG  120
GGGGGGGGAD ALPWRHRPSP PSSAVATTSA AAAAALMAPM MLQPLDAGGG ASAPPPPIRG  180
IPIYNGPGGF PFLQPSPAAG DVGHHHHHHP KMGFYSSYHH PSTWPSTSPS PLAAPPGAAS  240
SPLDPTAAFL SSPHHRMLSA ASGRLNGMLS VSDTLRSYGV PGAAAPGVIG GAHHHHHHLH  300
GGQPFVGALA SRFMPKLPAK RSMRAPRMRW TSTLHARFVH AVELLGGHER ATPKSVLELM  360
DVKDLTLAHV KSHLQMYRTV KSTDKPAASS GPADGGSGDE EFAGGGQAAS GGGDSMCLRG  420
GGGGRAAAAA FAEHGRSASE GAASSVGGGG GGGDMDQSSA GNTSTTRWSN SSRDPWLSSN  480
SCNMDAHRSV GLSSPIENLE PCRSSSSQVS NHELSSPSLE FTLGRPDWHG ADHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-16327381357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16327381357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16327381357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16327381357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17985GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0068300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2687480.0FJ268748.1 Oryza sativa Japonica Group rolled leaf 9 (RL9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610960.10.0probable transcription factor RL9
SwissprotQ0J2350.0ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLI1QNQ40.0I1QNQ4_ORYGL; Uncharacterized protein
STRINGORGLA09G0068300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.17e-42G2-like family protein