PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA08G0227400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 232aa MW: 24835.4 Da PI: 10.2589 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.9 | 1.5e-30 | 19 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdk 90 lppGfrFhPtdeelvv+yL++k+ g +l++ vi+++ +++k++Pwd+p + +++ + yfF+ r +++ +g+r++ +++ g Wk a g+dk ORGLA08G0227400.1 19 LPPGFRFHPTDEELVVQYLRRKAFGMPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPHAA-RGRRQQVTASGGCWKqAGGRDK 106 79****************************.8899998***********43..456789*****99875.68899999999****4556899 PP NAM 91 evlsk...kgelvglkktLvfy........kgrapkgektdWvmheyrl 128 +v+++ +++lvg+kk +vf + a + Wvmhey+l ORGLA08G0227400.1 107 PVVVArcgGSHLVGVKKGMVFVprqgrkapAAAAAAAGGGCWVMHEYSL 155 999988988999**********8854433222333333667******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-40 | 14 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.41 | 19 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-20 | 20 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MERAAAAAPV VMRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGMPLPAAV IPDLHNLFKL 60 DPWDIPGASS DGDKYFFAVR PHAARGRRQQ VTASGGCWKQ AGGRDKPVVV ARCGGSHLVG 120 VKKGMVFVPR QGRKAPAAAA AAAGGGCWVM HEYSLALPMH KKGCLAEAEE WVVCRIFQRS 180 SSGSRSPRRP DNDMRRTMPA VAELGRSPSP SSSSSQSSCV TSSSDQEEVS SG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-29 | 19 | 185 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-29 | 19 | 185 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA08G0227400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061543 | 0.0 | AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence. | |||
GenBank | AK068776 | 0.0 | AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence. | |||
GenBank | AK104766 | 0.0 | AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence. | |||
GenBank | EU846997 | 0.0 | EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650414.1 | 1e-125 | NAC domain-containing protein 18 | ||||
TrEMBL | I1QLH3 | 1e-168 | I1QLH3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0227400.1 | 1e-168 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-35 | NAC domain containing protein 83 |