PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0219000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 390aa    MW: 41425.1 Da    PI: 5.125
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0219000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43.1e-35491402102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+++l
  ORGLA08G0219000.1  49 FLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRL 131
                        9*****************************************************************99.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  ORGLA08G0219000.1 132 LCEIHRRKV 140
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-3840133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5945138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.83E-3546138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-204972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-208799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-20100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MADQTAAAVV VVGGAAATMG EPSPPPPAPA AEAAGVGVGQ QQRTVPTPFL TKTYQLVDDP  60
AVDDVISWND DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA  120
NDCFRRGERR LLCEIHRRKV TPPAPAATTA AVAAAIPMAL PVTTTRDGSP VLSGEEQVIS  180
SSSSPEPPLV LPQAPSGSGS GGVASGDVGD ENERLRRENA QLARELSQMR KLCNNILLLM  240
SKYASTQQLD AANASSAAGN NNNNNCSGES AEAATPLPLP AVLDLMPSCP GAASAAAPVS  300
DNEEGMMSAK LFGVSIGRKR MRHDGGGDDD HAATVKAEPM DGRPHGKDEH SAETQAWPIY  360
RPRPVYQPIR ACNGYEYDRA GSDQDGSNST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-26451417112Heat shock factor protein 1
5hdn_A2e-26451417112Heat shock factor protein 1
5hdn_B2e-26451417112Heat shock factor protein 1
5hdn_C2e-26451417112Heat shock factor protein 1
5hdn_D2e-26451417112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0219000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4063540.0CU406354.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108F04, full insert sequence.
GenBankCU4068840.0CU406884.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875859.10.0heat stress transcription factor B-2b isoform X2
SwissprotQ6Z9C80.0HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLI1QL890.0I1QL89_ORYGL; Uncharacterized protein
STRINGORGLA08G0219000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-61heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]