PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0191700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 385aa    MW: 41204.5 Da    PI: 8.0423
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0191700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-07204226123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ Cgk F+r  nL+ H+r H
  ORGLA08G0191700.1 204 HYCQVCGKGFKRDANLRMHMRAH 226
                        68*******************99 PP
2zf-C2H212.20.00054296319123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        y+C+ Cg k+Fs  s+L++H + +
  ORGLA08G0191700.1 296 YVCNRCGrKHFSVLSDLRTHEKHC 319
                        9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.25E-6202229No hitNo description
SMARTSM003550.0034204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653204231IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-7204231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
SMARTSM00355140258291IPR015880Zinc finger, C2H2-like
SMARTSM0035536296322IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MIPGSGGGGG GGGISPYLVQ SQHGHGGGVD GMEMEEGGGF MGEQPQCHPL LYNLSVLKDR  60
VQQLHPLVGL AVAHNAHAHG PLDVSAADAI IQEIVAAASS MMYAFQLLCD LGTAPTTAPS  120
QETAAASAVV VKNNDHAADA GQMEDDHLMQ QQWQQNGSRQ HDYSSHAHAP PVFHSETAAP  180
AGATSATDTI IELDAAELLA KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KSKAALSNPT  240
KLLAKGGDET MAAAARKYSC PQEGCRWNRR HAKFQPLKSV ICAKNHYKRS HCPKMYVCNR  300
CGRKHFSVLS DLRTHEKHCG DHRWLCSCGT SFSRKDKLIG HVSLFAGHQP VMPLDAPRAG  360
KRQRSSSASV AGNIDDTTGI GMGAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0191700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632900.0AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045870.0AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055440.0AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649514.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-101STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLI1QKG60.0I1QKG6_ORYGL; Uncharacterized protein
STRINGORGLA08G0191700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-104C2H2 family protein