PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0177600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 336aa    MW: 36655.4 Da    PI: 7.2318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0177600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-52241541128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        lppGfrFhPtdeelv++yL++kv +  +    v i+evd++++ePw+Lp++++ +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+e
  ORGLA08G0177600.1  24 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-GVdIAEVDLNRCEPWELPEAARIGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDRE 114
                        79*************************888.455***************988999************************************* PP

                NAM  92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v+++   +g+l+g+kktLvfykgrap+gekt+Wv+heyrl
  ORGLA08G0177600.1 115 VVAAaaaGGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 154
                        **998888999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-6316177IPR003441NAC domain
PROSITE profilePS5100559.08124177IPR003441NAC domain
PfamPF023653.7E-2725154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGDALWEMLG EEMAAAAAAG EHGLPPGFRF HPTDEELVTF YLAAKVFNGA CCGGVDIAEV  60
DLNRCEPWEL PEAARIGEKE WYFFSLRDRK YPTGLRTNRA TGAGYWKATG KDREVVAAAA  120
AGGALIGMKK TLVFYKGRAP RGEKTKWVLH EYRLDGDFAA ARRSTKEEWV ICRIFHKVGD  180
QYSKLMMMKS PASYYLPVSH HHPSSIFHDL PPVPFPNPSL VPFHHDLPTS FHPPLLQHSH  240
ANSKNSSSNN GGFVFPNEPN TTNSSDNHIS CNGAMAAAAF PSFSCASTVT GKGGPPAQLG  300
VNAGQQEPPP PTWMDAYLQH SGFIYEMGPP AVPRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-492417717165NO APICAL MERISTEM PROTEIN
1ut4_B6e-492417717165NO APICAL MERISTEM PROTEIN
1ut7_A6e-492417717165NO APICAL MERISTEM PROTEIN
1ut7_B6e-492417717165NO APICAL MERISTEM PROTEIN
3swm_A6e-492117717168NAC domain-containing protein 19
3swm_B6e-492117717168NAC domain-containing protein 19
3swm_C6e-492117717168NAC domain-containing protein 19
3swm_D6e-492117717168NAC domain-containing protein 19
3swp_A6e-492117717168NAC domain-containing protein 19
3swp_B6e-492117717168NAC domain-containing protein 19
3swp_C6e-492117717168NAC domain-containing protein 19
3swp_D6e-492117717168NAC domain-containing protein 19
4dul_A6e-492417717165NAC domain-containing protein 19
4dul_B6e-492417717165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0177600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060490.0AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648828.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8513e-85NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLI1QK250.0I1QK25_ORYGL; Uncharacterized protein
STRINGORGLA08G0177600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.16e-81NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]