PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA08G0137900.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 332aa MW: 36420.1 Da PI: 5.635

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA08G0137900.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.9	6e-47	7	140	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka...eekewyfFskrdkkyatgkrknratksgyWk 84 lp+GfrF Ptdeelv++yL++k+ + ++ +i++vd+y+++Pw+Lp + + + e+yfF++r++ky++g r +rat+ gyWk ORGLA08G0137900.1 7 LPAGFRFFPTDEELVTYYLARKAMDATFAS-AAIRDVDLYTSDPWHLPCdssaaS--TgggGGGECYFFCRRSSKYPSGARVRRATAGGYWK 95 799**********************988.78**********94355431..13334559*********************** PP NAM 85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 +tgkdk v+++ +g lvg+kktLvfy+grap+gekt+Wvmhey+ ORGLA08G0137900.1 96 STGKDKGVYAAggGGGLVGTKKTLVFYEGRAPRGEKTSWVMHEYS 140 ******9877889*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.26E-52	4	174	IPR003441	NAC domain
PROSITE profile	PS51005	53.193	7	174	IPR003441	NAC domain
Pfam	PF02365	9.4E-26	8	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEEEQRLPAG FRFFPTDEEL VTYYLARKAM DATFASAAIR DVDLYTSDPW HLPCDSSAAS 60 TGGGGGGECY FFCRRSSKYP SGARVRRATA GGYWKSTGKD KGVYAAGGGG GLVGTKKTLV 120 FYEGRAPRGE KTSWVMHEYS RAPSTNFIRG AQARTHNLLD IIYSEWVICR VFKKQPPIEH 180 WLEMEQEVET TTTVQEHTPN RRRLPPAEAA AAAPPPSGQP WQHTSRRSGD GRAAIDGGNR 240 EEEEDEHGLA REESSSPVVI SSPSRCTSSP SSRLLNHEHL GASSSDDLPE LMEFGDIYGG 300 IAAGGPTDQQ ASSSNSNSIC NFLDEPYYCW NF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-40	7	175	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-40	7	175	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-40	7	175	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-40	7	175	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-40	7	175	20	169	NAC domain-containing protein 19
3swm_B	1e-40	7	175	20	169	NAC domain-containing protein 19
3swm_C	1e-40	7	175	20	169	NAC domain-containing protein 19
3swm_D	1e-40	7	175	20	169	NAC domain-containing protein 19
3swp_A	1e-40	7	175	20	169	NAC domain-containing protein 19
3swp_B	1e-40	7	175	20	169	NAC domain-containing protein 19
3swp_C	1e-40	7	175	20	169	NAC domain-containing protein 19
3swp_D	1e-40	7	175	20	169	NAC domain-containing protein 19
4dul_A	1e-40	7	175	17	166	NAC domain-containing protein 19
4dul_B	1e-40	7	175	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA08G0137900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004666	0.0	AP004666.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0431A03.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650320.1	1e-179	NAC domain-containing protein 87 isoform X1
Swissprot	Q9FLJ2	6e-54	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	I1QIX8	0.0	I1QIX8_ORYGL; Uncharacterized protein
STRING	ORGLA08G0137900.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14765	21	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-42	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]