PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0128600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 348aa    MW: 37257.6 Da    PI: 4.3563
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0128600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.4e-2086139356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t+eq++ Le+ Fe+++++  e+++eLA++lg+  rqV vWFqNrRa++k
  ORGLA08G0128600.1  86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 139
                        56789************************************************9 PP
2HD-ZIP_I/II132.91.2e-4285176192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl++eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal++++++L +++++Lr+++ 
  ORGLA08G0128600.1  85 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVI 176
                        69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.23681141IPR001356Homeobox domain
SMARTSM003891.9E-1984145IPR001356Homeobox domain
SuperFamilySSF466897.1E-1985149IPR009057Homeodomain-like
CDDcd000862.05E-1886142No hitNo description
PfamPF000463.2E-1786139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-2187148IPR009057Homeodomain-like
PRINTSPR000316.5E-6112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000316.5E-6121137IPR000047Helix-turn-helix motif
PfamPF021838.1E-17141183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDPGRVVFDS GVARRACPGG AQMLLFGGGG SANSGGFFRG VPAAVLGMDE SRSSSSAAGA  60
GAKRPFFTTH EELLEEEYYD EQAPEKKRRL TAEQVQMLER SFEEENKLEP ERKTELARRL  120
GMAPRQVAVW FQNRRARWKT KQLEHDFDRL KAAYDALAAD HHALLSDNDR LRAQVISLTE  180
KLQDKETSPS SATITTAAQE VDQPDEHTEA ASTTGFATVD GALAAPPPGH QQPPHKDDLV  240
SSGGTNDDGD GGGAAVVVFD VTEGANDRLS CESAYFADAA EAYERDCAGH YALSSEEEDG  300
GAVSDEGCSF DLPDAAAAAM FGAAGVVHHD AAADEEAQLG SWTAWFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0128600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1457290.0AF145729.1 Oryza sativa homeodomain leucine zipper protein (Oshox5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650258.10.0homeobox-leucine zipper protein HOX5
SwissprotQ9XH360.0HOX5_ORYSI; Homeobox-leucine zipper protein HOX5
TrEMBLA0A0D3H0920.0A0A0D3H092_9ORYZ; Uncharacterized protein
TrEMBLI1QIN50.0I1QIN5_ORYGL; Uncharacterized protein
STRINGORGLA08G0128600.10.0(Oryza glaberrima)
STRINGOBART08G14710.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-45homeobox 1