PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0091000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 391aa    MW: 44566.3 Da    PI: 7.1798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0091000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.34.9e-17461231598
                        -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +l++pk+f+++ +g+   + +++le+ + +s++v++  +k+++++++++GW +Fvk  +L+ gD+++F+++g+s+f   v +f+
  ORGLA08G0091000.1  46 QLTIPKEFVQRLKGD--IPEEIQLETHNRNSYTVRV--DKSQEKVIFAAGWAQFVKTFDLRMGDSMMFRFKGNSQF--DVIIFD 123
                        79*******999888..5668***************..**********************************9999..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1922123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1924124IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-734125IPR003340B3 DNA binding domain
PfamPF023626.8E-1446123IPR003340B3 DNA binding domain
CDDcd100172.85E-1646123No hitNo description
PROSITE profilePS5086311.91447125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGTWCERCRR RDEQDYRNLD DCQKHFLLLM MGDFQHEIRG EQIVEQLTIP KEFVQRLKGD  60
IPEEIQLETH NRNSYTVRVD KSQEKVIFAA GWAQFVKTFD LRMGDSMMFR FKGNSQFDVI  120
IFDQVGREKV CSVAVDDYLD PNVQEGRTDA TETLNSSRAH SQDDYLDHNV QEGRTNATET  180
LNSSRAHSQP MPMQTPATET LNSSRAHSQD MPMQSPATET LNSSRAHPQP MPMQLPTETV  240
NHFHAPHYPM QMPIENMALS RTQAMPTQMQ SPPTYRWTQV QRDNLRYSLP SEDQGCRVGV  300
IPDPIIGRRT KLNPVQEKVV NFKIQHIHSE VPIFVAVIKR SNVSGVLSTL SVAKRYVDEY  360
LGGERFISLS RLGGKWGIRL AGGGGSGTRM V
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0091000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2234410.0AC223441.1 Oryza glaberrima, complete sequence.
GenBankAC2370910.0AC237091.1 Oryza glaberrima clone OG_BBa0009K13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875809.10.0putative B3 domain-containing protein Os08g0325100
SwissprotQ6Z0D20.0Y8251_ORYSJ; Putative B3 domain-containing protein Os08g0325100
TrEMBLI1QHK90.0I1QHK9_ORYGL; Uncharacterized protein
STRINGORGLA08G0091000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-12B3 family protein