PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0030400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 370aa    MW: 38144.9 Da    PI: 7.2569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0030400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-1091116127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC+ f++ GtC+y  +C+FaHg+
  ORGLA08G0030400.1  91 FKTKLCCKFRA-GTCPYVTNCNFAHGM 116
                        69*********.*************95 PP
2zf-CCCH17.95.4e-06173198126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        yk + C+ f+    C+yGd C+F H+
  ORGLA08G0030400.1 173 YKGRHCKKFYTDEGCPYGDACTFLHD 198
                        77888********************7 PP
3zf-CCCH43.35.9e-14249274126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt++C+ +  tG+C++G++C+FaHg
  ORGLA08G0030400.1 249 WKTRICNKWEMTGYCPFGSKCHFAHG 274
                        8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-1488123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-888121IPR000571Zinc finger, CCCH-type
SMARTSM003560.001490116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.02890117IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-791116IPR000571Zinc finger, CCCH-type
SMARTSM003560.43172199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-8172200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629172200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7172200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-17243278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-10244279IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422248276IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-11249274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWA NAAAQGGDAG IWATEDDYNS QWNADGGGGG GGSSRAGSEQ  60
PPPGKKSRGG GGGGEGGGNT SKSRAIGKMF FKTKLCCKFR AGTCPYVTNC NFAHGMEELR  120
KPPPNWQEIV AAHEEATEAR EEHQIPIMTS SGPTAGGDAG CGGGGGGGSG RAYKGRHCKK  180
FYTDEGCPYG DACTFLHDEQ SKARESVAIS LSPSVGGGGG GGSYNSAAAA AASASAAAGN  240
GPMQKPSNWK TRICNKWEMT GYCPFGSKCH FAHGAAELHK YGGGLVDIDS RDASATPDSK  300
QAVVSAKAPA ETAAASTTVL PHADVYHLGV QAQRSTIAGQ RSGQVQRPIQ KWKGPDKISR  360
IYGDWIDETE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0030400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046350.0AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01.
GenBankAP0046980.0AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648128.10.0zinc finger CCCH domain-containing protein 56
RefseqXP_015648129.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLI1QFV30.0I1QFV3_ORYGL; Uncharacterized protein
STRINGORGLA08G0030400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.14e-95C3H family protein