PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0016200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 953aa    MW: 104938 Da    PI: 9.0152
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0016200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.2e-07314334526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C++f + G C++G++C++ H+
  ORGLA08G0016200.1 314 PCHDFVK-GRCSRGANCRYVHD 334
                        8******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.018225250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4229249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267229251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126309336IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021309335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4312335IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4314334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817368395IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7369393IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5369394IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4372394IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 953 aa     Download sequence    Send to blast
MTGETRKERS KWDTKGPPDI VEISEDESLP MNMDDHKKGN DLPPSQDFGH GNDKQIGESV  60
NLKSTVSMHH GSTGHEHDRA DGLNKDIKER SSKASSERLP LRMGDEDHNK NDWHNRGFEK  120
AAGNQGMGRY ADDRRRGDGW GTTLSRGYSS RISSSGPDAW KRSRSPLSPR GGWNRSRRNR  180
SRSRSRSRSR SIGRGRGRSR SRSRSPYFSD RGSEWRVERG RSSGGPALPC RDFVAGRCRR  240
GSNCRFPHED GVRRQLDEHY PVDSRERYGH QNRDFMDPRE QDDYLRSRPL RGGHYDEGTW  300
ERSEPRREYR STMPCHDFVK GRCSRGANCR YVHDDSTSHG GWRDEVRDNA IGRSGPDSSY  360
GNRTEHRRTN KNPCKFFANG GCRRGQNCPY LHEEASQSQM GLGAPDEPGY TGGPTTRGDY  420
LSWSEQNNSV QASSHVLSRD DRENPVPQGT GRNDSRYENK NRHSKDAGSS QYQIFPQDDF  480
GSVGQNKPEI AASQLPQFIP SVQTGTESIN IDKVSDMGGQ SGPGTVGNLS MQIGMHSANL  540
LGGHNLGQKA ESQDAISQIS AAPSLPGATQ LQNTTSSVPL NSQVQQSDFS LHPNRQDQFA  600
VPLATTNNSA PSMQSQPVAP YMGHSQHGYI MGAQSLPDLS VHNGQIFNVG QVPQNLPTIV  660
HAGQNQATSD TANLGRDSGD QSLHNTHNFQ PVAPNEQTQS QTLQGLSVVA SSSSVDMAGA  720
PLSHNAVSSQ EEVRRVTASL AQYFVPSLTA DTSGLQSSQP DPNSSLMNNS SAAPQAVQPN  780
HWPWLQQAGM VQPSHIVPSE QPAPQTFQAP MAAGSSNGNP LILPHSVAPT GPAAALATNE  840
TTPAENKKEE PKDTDAEANE YGENKKSKDS KALKMFKLAL ADFVKDALKP TWKEGQMSRE  900
VHKTIVKKVV DKVTTTVENT PQTKEKIDIY MSYSREKLNK LVQAYVGKYA KKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193203RGRGRSRSRSR
2195203RGRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0016200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004550.0AK100455.1 Oryza sativa Japonica Group cDNA clone:J023091E18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650360.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_025883327.10.0zinc finger CCCH domain-containing protein 55
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLF1BLA30.0F1BLA3_ORYGL; Uncharacterized protein
STRINGORGLA08G0016200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-08C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]