PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA08G0004900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 401aa MW: 42558.2 Da PI: 6.8289 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.7e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+d ORGLA08G0004900.1 11 VPPGFRFHPTEEELLNYYLRKKVASEQIDL-DVIRDVDLNKLEPWDIQErcKIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRD 101 69****************************.9***************963444443456********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++ + +g++ktLvfykgrap+g+k+dW+mheyrl ORGLA08G0004900.1 102 KAIYN-AVHRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 *****.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-56 | 7 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.66 | 11 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-28 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MSISVNGQSC VPPGFRFHPT EEELLNYYLR KKVASEQIDL DVIRDVDLNK LEPWDIQERC 60 KIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYNAVHR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DPATDTAAAT PTVTSAAAAA AAAMAAAADG GQEDGWVVCR 180 VFKKKHHHKE AGGGGGKHDG DGSAGAKAAH AYSSSDDALD QILQYMGRSC KQEHELPSPQ 240 ASGGGGAGAG SRPASRYLRP IDTVLGGHGF MKLPPLESPS AATALSSTPS TGGDAASSAA 300 AAAADHLLLH HHHRTDWAMM DRLVASHLNG ANSDAPDDQL CFDAADDDGL AYYSAAATRL 360 LGGANAGTDD DLWSFARSAA PPPPPPPPSS ATPERLSHVA L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 8 | 185 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 8 | 185 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 8 | 185 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 8 | 185 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-46 | 8 | 185 | 14 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 8 | 185 | 14 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA08G0004900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN634071 | 0.0 | JN634071.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648974.1 | 0.0 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-117 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | I1QF48 | 0.0 | I1QF48_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0004900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 9e-88 | NAC family protein |