PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0246500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 290aa    MW: 31945.8 Da    PI: 8.3828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0246500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-06262284223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +Cp+C+k F+++ +L+ H  + H
  ORGLA07G0246500.1 262 VCPKCSKAFRDPVLLVEHVERdH 284
                        7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.83E-13459No hitNo description
PROSITE profilePS510397.5031059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.7E-101053IPR000058Zinc finger, AN1-type
SMARTSM001544.1E-41352IPR000058Zinc finger, AN1-type
PfamPF014285.6E-141351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.5E-1091149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.49E-993145No hitNo description
PROSITE profilePS510397.72898145IPR000058Zinc finger, AN1-type
SMARTSM001540.073101142IPR000058Zinc finger, AN1-type
PfamPF014283.5E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.45224247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
SMARTSM003558261284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767261289IPR007087Zinc finger, C2H2
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTSHQCPNA NQKDVTVLIC  60
PLCAKGVRLN PNEDPNITWD THVNSDCDPS NYQKVTKKKK CPVPGCRETL TFSNTIRCKD  120
CTKEHCLKHR FGPDHKCPGP RKPESTFPFG NMLRRSQKAE SRSNSNSSST SSSWWSSSLL  180
TAATSFKSSA EAGMQKLSTA TTQAIQKAKD GISTSSSNSG DLVEQCVQCP ARFSTVGALI  240
EHCEKSHQSN SQSSRSRVTV DVCPKCSKAF RDPVLLVEHV ERDHGGTSRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0246500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8291290.0CT829129.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN113H10, full insert sequence.
GenBankHQ3248180.0HQ324818.1 Oryza sativa Japonica Group clone KCS176H09 zinc finger AN1 and C2H2 domain-containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644892.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B90.0SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLI1QEC30.0I1QEC3_ORYGL; Uncharacterized protein
STRINGORGLA07G0246500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]